[gmx-users] Parallel run error

[M.Naser]

Hi Itamar,

Thanks for your response. The followings are the commands I have been using:
grompp -f md.mdp -c confout.gro -o pro.tpr -p pro.top -np 2
mpirun -c 2  mdrun -s pro.tpr -o pro.trr -v

Thanking you again,

Abu


> can you send the complete commands you used, how you run grompp and
> mdrun?  It will help.
>
> M.Naser wrote:
>
>>Hi All Users,
>>
>>I have been trying to run a molecular simulation on 2 nodes. I have been
>>getting the following error message:
>>
>>One of the processes started by mpirun has exited with a nonzero exit
>>code.  This typically indicates that the process finished in error.
>>If your process did not finish in error, be sure to include a "return
>>0" or "exit(0)" in your C code before exiting the application.
>>
>>PID 30006 failed on node n1 (10.10.10.2) due to signal 11.
>>
>>Cloud anyone  give me a clue what went wrong?
>>
>>
>>
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This e-mail and any files transmitted with it are confidential
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whom it is addressed.  If you are not the intended recipient
you are prohibited from using any of the information contained
in this e-mail.  In such a case, please destroy all copies in
your possession and notify the sender by reply e-mail.  Heriot
Watt University does not accept liability or responsibility
for changes made to this e-mail after it was sent, or for
viruses transmitted through this e-mail.  Opinions, comments,
conclusions and other information in this e-mail that do not
relate to the official business of Heriot Watt University are
not endorsed by it.
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