[gmx-users] Parallel run error

[David]

On Wed, 2004-11-24 at 20:07 +0000, M.Naser wrote:
> Hi Itamar,
> 
> Thanks for your response. The followings are the commands I have been using:
> grompp -f md.mdp -c confout.gro -o pro.tpr -p pro.top -np 2
> mpirun -c 2  mdrun -s pro.tpr -o pro.trr -v
> 
does it run fine on one processor?
> Thanking you again,
> 
> Abu
> 
> 
> > can you send the complete commands you used, how you run grompp and
> > mdrun?  It will help.
> >
> > M.Naser wrote:
> >
> >>Hi All Users,
> >>
> >>I have been trying to run a molecular simulation on 2 nodes. I have been
> >>getting the following error message:
> >>
> >>One of the processes started by mpirun has exited with a nonzero exit
> >>code.  This typically indicates that the process finished in error.
> >>If your process did not finish in error, be sure to include a "return
> >>0" or "exit(0)" in your C code before exiting the application.
> >>
> >>PID 30006 failed on node n1 (10.10.10.2) due to signal 11.
> >>
> >>Cloud anyone  give me a clue what went wrong?
> >>
> >>
> >>
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> 
> 
> 
> ________________________________________________________________
> 
> DISCLAIMER:
> 
> This e-mail and any files transmitted with it are confidential
> and intended solely for the use of the individual or entity to
> whom it is addressed.  If you are not the intended recipient
> you are prohibited from using any of the information contained
> in this e-mail.  In such a case, please destroy all copies in
> your possession and notify the sender by reply e-mail.  Heriot
> Watt University does not accept liability or responsibility
> for changes made to this e-mail after it was sent, or for
> viruses transmitted through this e-mail.  Opinions, comments,
> conclusions and other information in this e-mail that do not
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> not endorsed by it.
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,          75124 Uppsala, Sweden
phone:  46 18 471 4205          fax: 46 18 511 755
spoel at xray.bmc.uu.se    spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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