[gmx-users] [Fwd: dna in gromacs]

David van der Spoel spoel at xray.bmc.uu.se
Tue Nov 30 15:48:47 CET 2004

-------- Forwarded Message --------
From: mymonii at pob.huji.ac.il
To: spoel at xray.bmc.uu.se, medeawan at sohu.com
Subject: dna in gromacs
Date: Tue, 30 Nov 2004 15:34:29 +0200

I have problem when I am using the grompp command with DNA, I am getting
this massage : " No default Proper Dih. types, using zeroes"
I will be glad, if you can tell me which gb (gb_9 or gb_11) should I use
for each nucleic acid.

I have additional problem, while I am using the grompp command with DNA-proein
complex, it's recognize the dna as protein and other

thank you

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David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,          75124 Uppsala, Sweden
phone:  46 18 471 4205          fax: 46 18 511 755
spoel at xray.bmc.uu.se    spoel at gromacs.org   http://xray.bmc.uu.se/~spoel

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