Re: Re: [gmx-users] the protein drifts when molecular dynanic simulation

[zjim]

Many thanks David.


> On Tue, 2004-11-30 at 20:39 +0800, zjim wrote:

> > Dear gmx-user

> > When perform protein md in a box with, the protein drifts to one side

> > of the box,and as the md ends(6 ns),some of it even comes out the

> > box,this maybe a problem. so my quesition is why is the protein drift

> > when simulation and how to avoid this.

> it's not a problem. see archived messages.

> 

> > Somebody maybe help me

> > thank you in advance

> > 

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> > 

> > 

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> -- 

> David.

> ________________________________________________________________________

> David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,

> Dept. of Cell and Molecular Biology, Uppsala University.

> Husargatan 3, Box 596,          75124 Uppsala, Sweden

> phone:  46 18 471 4205          fax: 46 18 511 755

> spoel at xray.bmc.uu.se    spoel at gromacs.org   http://xray.bmc.uu.se/~spoel

> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++

> 

> 

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