[gmx-users] (no subject)
kay.gottschalk at weizmann.ac.il
Thu Sep 23 12:03:41 CEST 2004
Are you sure VMD is loading all the frames? I once had the problem that
too much memory was needed and I had to remove the water from my system
to view it with VMD. I saw that at a certain time just no more frames
were loaded. But perhaps that's unrelated...
On Sep 23, 2004, at 12:53 PM, Robert d'Rozario wrote:
> I was wondering if anyone has this same problem, its a bit worrying.
> I am simualting an alpha helix in DMSO with PME. I have 3 separate
> trajectories, each a continuation. The first one runs from 0-4ns then
> 2nd one 4-6ns then the 3rd 6-10ns. I have then concatenated the files
> which runs from 0-10ns. At 6.1 ns I viewed the system, using VMD, and
> seems to freeze as if the positon restraints are on everything.
> Any help would be greatfully appreciated
> Robert D'Rozario
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