[gmx-users] (no subject)

Kay Gottschalk kay.gottschalk at weizmann.ac.il
Thu Sep 23 12:03:41 CEST 2004

Are you sure VMD is loading all the frames? I once had the problem that 
too much memory was needed and I had to remove the water from my system 
to view it with VMD. I saw that at a certain time just no more frames 
were loaded. But perhaps that's unrelated...
Good luck,

On Sep 23, 2004, at 12:53 PM, Robert d'Rozario wrote:

> Hi,
> I was wondering if anyone has this same problem, its a bit worrying.
> I am simualting an alpha helix in DMSO with PME.  I have 3 separate
> trajectories, each a continuation.  The first one runs from 0-4ns then
> 2nd one 4-6ns then the 3rd 6-10ns.  I have then concatenated the files
> which runs from 0-10ns.  At 6.1 ns I viewed the system, using VMD, and 
> it
> seems to freeze as if the positon restraints are on everything.
> Any help would be greatfully appreciated
> Robert D'Rozario
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