Still need help: [gmx-users] gromacs on mac osx

[Yunfeng Hu]

On Sep 22, 2004, at 10:34 AM, Yunfeng Hu wrote:

> You are right. When I type the full path, it seems working. I thought 
> that I have proper links by using 'make links'. Then how do you make 
> sure that you do not need to type the full path every time. I try to 
> set the full path in the .cshrc and it still shows the same error as 
> before. Thanks.
>
> Eric
> On Sep 21, 2004, at 6:16 PM, Choon Peng wrote:
>
>> Hi Eric,
>>
>>   I mean try using the full path, say:
>> /usr/local/gromacs/powerpc-apple-darwin7.0.0/bin/grompp
>>
>> However, what I have on my laptop is the 3.1.5_pre1 version. Having 
>> problems
>> compiling 3.2.1 on my PowerBook but ok on our PowerMac G5...
>> Guess I'll have to try again.
>>
>> cheers,
>> Choon Peng
>>
>> On 9/22/04 8:59 AM, "Yunfeng Hu" <yunfeng at scripps.edu> wrote:
>>
>>> Can you specify what you mean? I am compiling it on a G4 ibook. 
>>> Thanks.
>>>
>>> Eric
>>> On Sep 21, 2004, at 5:35 PM, Choon Peng wrote:
>>>
>>>> Hi Eric,
>>>>
>>>>   Can you try using the full path to the grompp and mdrun?
>>>>
>>>> cheers,
>>>> Choon Peng
>>>> PS: I have Gromacs on my G4 laptop and our G5 cluster.
>>>> -- 
>>>> Mr Choon-Peng Chng
>>>> Research Associate
>>>> Computational Biology Group
>>>> Bioinformatics Institute, A*STAR
>>>> 30 Biopolis Street, Level 7. Singapore 138671.
>>>> DID: +65 6478 8301 FAX: +65 6478 9047
>>>> WWW: http://www.bii.a-star.edu.sg/~cpchng
>>>>
>>>> On 9/22/04 7:24 AM, "Yunfeng Hu" <yunfeng at scripps.edu> wrote:
>>>>
>>>>> Hi, I compiled fftw and gromacs 3.2 on mac osx without error. 
>>>>> However
>>>>> I
>>>>> get segmentation errors when I run the tutorials. Does anyone have
>>>>> similar experiences? Thanks.
>>>>>
>>>>> Eric Hu, Ph.D.
>>>>>
>>>>> _______________________________________________
>>>>> gmx-users mailing list
>>>>> gmx-users at gromacs.org
>>>>> http://www.gromacs.org/mailman/listinfo/gmx-users
>>>>> Please don't post (un)subscribe requests to the list. Use the
>>>>> www interface or send it to gmx-users-request at gromacs.org.
>>>>>
>>>>
>>>> _______________________________________________
> ###################################
>
> _______________________________________________
> gmx-users mailing list
> gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please don't post (un)subscribe requests to the list. Use the www 
> interface or send it to gmx-users-request at gromacs.org.
>
>
###################################
Yunfeng Hu, Ph.D
Research Associate
Department of Molecular Biology, MB-5
The Scripps Research Institute
10550 North Torrey Pines Road
La Jolla, CA 92037
Tel. (858) 784-2204
Fax. (858) 784-2860
Emal: yunfeng at scripps.edu
Web: http://www.scripps.edu/~yunfeng
###################################