[gmx-users] dssp problem

[David van der Spoel]

On Wed, 2004-09-29 at 15:59, smith wrote:
> dear users,
> 
> I installed the dsspcmbi.zip program in usr/local/bin/ area.unziped it and compiled for linux system
> 
> *I set the path as setenv DSSP  /usr/local/bin/dsspcmbi

have you tried running it separately on a pdb file?

> 
> *The do_dssp command does not produce any result  
> 
> Select a group: 3
> Selected 3: 'C-alpha'
> There are 200 residues in your selected group
> Opening library file /usr/local/gromacs/share/top/ss.map
> trn version: GMX_trn_file (single precision)
> Reading frame       0 time    0.000
> Back Off! I just backed up ddC9pfVk to ./#ddC9pfVk.1#
> 
> *But I dont get any output.There is no problem with storage space.
> 
> I dont know where the problem is.
> 
> Any suggestions/experience like this.need help
> 
> cheers
> smith
> 
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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