[gmx-users] Re: Installing fftw and then Gromacs

[David]

On Wed, 2005-08-03 at 14:03 +0530, Mahalakshmi S wrote:
> Dear Users,
> 
> I am a newbie to gromacs. I went through the installation manual of 
> gromacs. As the first step, I tried installing fftw using 
> fftw-2.1.5.tar.gz and did ./configure -enable-float on a IBM power4 p690 
> system (AIX version 5.2L) and then did  make and did make install. It 
> complains about undefined symbol in config.log file of fftw.
check mailing list archives. 

> 
> 1) ld: 0711-317 ERROR: Undefined symbol: .foobar
> ld: 0711-345 Use the -bloadmap or -bnoquiet option to obtain more 
> information.
> configure:8992: $? = 8
> configure: failed program was:
> | #line 8959 "configure"
> | /* confdefs.h.  */
> 
> 2) configure:9055: cc -o conftest -g   conftest.c cf77_test.o 
> -L/usr/local/lib/gc
> c-lib/powerpc-ibm-aix5.1.0.0/3.3.4 
> -L/usr/local/lib/gcc-lib/powerpc-ibm-aix5.1.0
> .0/3.3.4/../../.. -lfrtbegin -lg2c -lm -lgcc_s 
> /usr/local/lib/gcc-lib/powerpc-ib
> m-aix5.1.0.0/3.3.4/libgcc.a -lg >&5
> ld: 0711-317 ERROR: Undefined symbol: .foo_bar_
> ld: 0711-345 Use the -bloadmap or -bnoquiet option to obtain more 
> information.
> configure:9058: $? = 8
> configure: failed program was:
> | #line 9025 "configure"
> | /* confdefs.h.  */
> 
> 3) configure:11058: cc -o conftest -O3 -qansialias -w -qarch=auto 
> -qtune=auto 
> con
> ftest.c -lm  >&5
> ld: 0711-317 ERROR: Undefined symbol: BSDgettimeofday
> ld: 0711-345 Use the -bloadmap or -bnoquiet option to obtain more 
> information.
> configure:11061: $? = 8
> configure: failed program was:
> | #line 10999 "configure"
> | /* confdefs.h.  */
> ld: 0711-317 ERROR: Undefined symbol: gethrtime
> ld: 0711-345 Use the -bloadmap or -bnoquiet option to obtain more 
> information.
> configure:11159: $? = 8
> configure: failed program was:
> | #line 11097 "configure"
> | /* confdefs.h.  */
> 
> 4) ld: 0711-317 ERROR: Undefined symbol: getopt_long
> ld: 0711-345 Use the -bloadmap or -bnoquiet option to obtain more 
> information.
> configure:11355: $? = 8
> configure: failed program was:
> | #line 11293 "configure"
> | /* confdefs.h.  */
> 
> Thanks,
> Lakshmi
> 
> 
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,          75124 Uppsala, Sweden
phone:  46 18 471 4205          fax: 46 18 511 755
spoel at xray.bmc.uu.se    spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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