[gmx-users] Creating water slabs on bilayer headgroups

[David]

On Tue, 2005-08-09 at 12:20 +0100, fsaadedi at staffmail.ed.ac.uk wrote:
> Dear Users,
> 
> I am having trouble creating water slabs around the hydrophillic regions of my
> bilayer.  My bilayer size is approximately 8 7 6 nm in length.  I have 
> tried to
> use genbox to vary the positioning of the spc molecules in my system ( 
> which is
> 9 8 7 nm) but with no success.
make your box 8 7 10 nm

> 
> I have read the Mukhopadhyay paper and it does not mention how it they created
> their water slabs.
> 
> If anyone knows the commands for creating the water slabs on the bilayer
> headgroups it would be most appreciated.
> 
> 
> Farid
> 
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,          75124 Uppsala, Sweden
phone:  46 18 471 4205          fax: 46 18 511 755
spoel at xray.bmc.uu.se    spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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