[gmx-users] Creating water slabs on bilayer headgroups
spoel at xray.bmc.uu.se
Tue Aug 9 13:34:21 CEST 2005
On Tue, 2005-08-09 at 12:20 +0100, fsaadedi at staffmail.ed.ac.uk wrote:
> Dear Users,
> I am having trouble creating water slabs around the hydrophillic regions of my
> bilayer. My bilayer size is approximately 8 7 6 nm in length. I have
> tried to
> use genbox to vary the positioning of the spc molecules in my system (
> which is
> 9 8 7 nm) but with no success.
make your box 8 7 10 nm
> I have read the Mukhopadhyay paper and it does not mention how it they created
> their water slabs.
> If anyone knows the commands for creating the water slabs on the bilayer
> headgroups it would be most appreciated.
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David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
spoel at xray.bmc.uu.se spoel at gromacs.org http://xray.bmc.uu.se/~spoel
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