[gmx-users] Run keeps crashing

[Ur-Rehman, Saif]

Dear Users,
 
                 I am  attempting to run multiple copies of a peptide which i have chopped out off beta lactoglobulin. the main problem I have is my runs keep crashing. They only output pdb files which appear to be straight diagonal lines in the swiss pdb viewer. i have minimised  the energy in the structure considerably before commencing my run but this has not made any difference. any suggestions would be welcome.
 
 
Thank you
 
 
Saif
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