[gmx-users] g_anaeig, g_analyze, and ED

[oikawa]

Anthony Cruz wrote:

>Hi Users:
>
>I am trying to do an essential dynamics analysis of two simulation and I have 
>some question of the output that I get from g_anaeig and g_analyze. First 
>when I do the Overlap calculations between covariance analysis with g_anaeig 
>the -over option give me a plot with all the eigenvector and not the first 15 
>that I specified, How I use this plot? I need to go to the plot values and 
>find the overlap for the # eigenvectors that I decide to use. The other thing 
>is How I use the matrix from -inpr option? If the points go far from the 
>diagonal is not a good overlap???
>
>With respect to g_analyze I have a question. What is the meaning of the plots 
>from the  -dist and -ac options??? If someone could explain me or give some 
>references for background information it could help me to understand my 
>results.
>
>Thank you in advance.
>
>Best regards,
>Anthony
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