[gmx-users] Indx file making

[Yang Ye]

Hi, hnam

You may have noticed the advices given by others that it is not 
advisable to couple a few atoms separately (that's also my practice).
Just for your information, you may use make_ndx to complete most of the 
task while some text editing may be needed. The format of index file is 
simple to understand.

Yang Ye

hnam wrote:

>In the name of God
>I have three group in my system ,Protein ,Sol, Na+ ,how can i create these 
>group at index file or how can i make proper index file for my system. 
>
>Thank you very much in advance
>Institute of  Biochemistry  and  Biophysics (IBB)
>Tehran University 
>P.O.box 1417614411
>Tehran 
>Iran 
>
>
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-- 
/Regards,/
Yang Ye
/Computational Biology Lab
School of Biological Sciences
Nanyang Technological University
Singapore
Tel: 6316-2884
/