[gmx-users] gromacs 3.2.1 cygwin

[David]

On Tue, 2005-07-19 at 14:11 -0600, javier sacristan wrote:
> Hi, I am trying to install Gromacs-3.2.1 under CYGWIN with FFT 2.1.5, but
> when I am doing make..... I get this error: (cannot find -lxml2)
> 
try
configure  --without-xml

> Any idea??
> 
> Thank you very much
> 
> dlltool --as=as --dllname cygiconv-2.dll --def .libs/cygiconv-2.dll-def
> --output-lib .libs/libimp-cygiconv-2.a
> cc -O6 -fomit-frame-pointer -finline-functions -Wall -Wno-unused
> -malign-double -funroll-all-loops -I/usr/include/libxml
> 2 -o grompp.exe topio.o toppush.o topcat.o topshake.o convparm.o tomorse.o
> sorting.o splitter.o dum_parm.o readir.o add_
> par.o topexcl.o toputil.o topdirs.o grompp.o  ../mdlib/.libs/libmd.a
> -L/usr/X11R6/lib -L/opt/cxclient/usr/X11R6/lib -L/u
> sr/lib ../gmxlib/.libs/libgmx.a /usr/lib/librfftw.a /usr/lib/libfftw.a
> .libs/libimp-cygXm-2.a .libs/libimp-cygXft-2.a -l
> Xrender .libs/libimp-cygfontconfig-1.a .libs/libimp-cygfreetype-6.a
> .libs/libimp-cygexpat-0.a -lXt -lSM -lICE -lXext -lX
> p -lX11 -lxml2 -lz .libs/libimp-cygiconv-2.a -Wl,--rpath -Wl,/usr/X11R6/lib
> -Wl,--rpath -Wl,/usr/X11R6/lib
> /usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld: cannot
> find -lxml2
> 
> collect2: ld returned 1 exit status
> make[3]: *** [grompp.exe] Error 1
> make[3]: Leaving directory `/usr/local/gromacs-3.2.1/src/kernel'
> make[2]: *** [all-recursive] Error 1
> make[2]: Leaving directory `/usr/local/gromacs-3.2.1/src'
> make[1]: *** [all] Error 2
> make[1]: Leaving directory `/usr/local/gromacs-3.2.1/src'
> make: *** [all-recursive] Error 1
> 
> 
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,          75124 Uppsala, Sweden
phone:  46 18 471 4205          fax: 46 18 511 755
spoel at xray.bmc.uu.se    spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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