[gmx-users] kindly guide me!
feenstra at few.vu.nl
Thu Jun 2 11:41:31 CEST 2005
Dallas B. Warren wrote:
> > Is it possible to visualize the same in the INSIGHT II before
> entering into simulation or solvation step?
> ? Not sure what you are asking there. Depends on what file formats you
> can load into Insight, if it can handle the *.gro file, then you can
> load and view it.
Pretty sure insight doesn't read .gro.
Use 'editconf -f this.gro -o that.pdb' to convert.
>>Is there any other molecular visualisation tool for viewing the
> There are plenty, few have been mentioned on this emailing list, so try
> a search.
Gromacs comes with the simple trajectory viewer 'ngmx', which has the
advantage of showing bonds as they are defined in the topology.
For quick and simple work, I use rasmol.
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