[gmx-users] Fatal error message

[David]

On Mon, 2005-06-06 at 14:01 -0500, Lakhani, Ahmed Ashiqali wrote:
> creating statusfile for 1 node...
> 
> Hi everyone
> I am still trying Gromacs in windows platform.  I am keep runing to the
> message below.  I am convinced that I am not giving a right path for cpp. 
> anybody know how to fixed this problem

try using backslashes \ instead of /

> 
> 
> 
> Back Off! I just backed up mdout.mdp to ./#mdout.mdp.3#
> checking input for internal consistency...
> calling /WINDOWS/system32/wbem/cpp...
> '/WINDOWS/system32/wbem/cpp' is not recognized as an internal or external
> comman
> d,
> operable program or batch file.
> cpp exit code: 1
> Tried to execute: '/WINDOWS/system32/wbem/cpp  -IC:\Documents and
> Settings\Ahmed
>  Lakhani\Desktop\gromacs\share\top -DFLEX_SPC speptide.top > gromppa00428'
> The '/WINDOWS/system32/wbem/cpp' command is defined in the .mdp file
> processing topology...
> processing coordinates...
> Fatal error: number of coordinates in coordinate file (b4em.gro, 2741)
>              does not match topology (speptide.top, 0)
> 
> C:\Documents and Settings\AhmedLakhani\Desktop\gromacs\share\tutor\speptide>
> 
> ahmed
> 
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,          75124 Uppsala, Sweden
phone:  46 18 471 4205          fax: 46 18 511 755
spoel at xray.bmc.uu.se    spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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