[gmx-users] long bonds and seperating protein into chains

Kai Zhuang kai.zhuang at gmail.com
Fri Jun 17 15:42:23 CEST 2005

i have a protein where pdb2gmx complains that it contains long bonds.

i'm suspecting the problem is that the protein has several domains and
should be multi-meric instead of monomeric as it's presented in the
pdb file.
can i assume that the long bonds are where the chains break off?
Kai Zhuang
BioMedical Engineering @ University of Toronto
kai dot zhuang at gmail dot com
kai.zhuang at gmail.com

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