[gmx-users] long bonds and seperating protein into chains
feenstra at few.vu.nl
Fri Jun 17 19:49:25 CEST 2005
Kai Zhuang wrote:
> i have a protein where pdb2gmx complains that it contains long bonds.
> i'm suspecting the problem is that the protein has several domains and
> should be multi-meric instead of monomeric as it's presented in the
> pdb file.
> can i assume that the long bonds are where the chains break off?
pdb2gmx recognizes chains by their chain identifier. Fix your pdb file.
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