[gmx-users] DNA-protein

[Anton Feenstra]

Nancy Deng wrote:

> Dear All,
> 
> please forgive me if it sounds ignorant.
> 
> I'm just wondering whether gromacs is also very reliable to simulate the DNA-protein interactions, for example by BD or MD. It will be very helpful if some publication available for my reference.

There must be plenty of papers (publications) on DNA simulations in the 
OPLS forcefield (which is available in Gromacs), and there are a few 
recent papers by Van Gunsteren and Oostenbrink on DNA simulations in the 
(new) Gromos g53a6 forcefield, which, on request, is also available in 
Gromacs.


-- 
Groetjes,

Anton

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|  _   _  ___,| K. Anton Feenstra                                     |
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