[gmx-users] Fatal error of mdrun
Binbin Liu
bmbbl at bmb.leeds.ac.uk
Fri Mar 4 11:26:16 CET 2005
Hello there,
When I tyied to do energy minimisation with mdrun. The program gave error
message:
Fatal error: ci = -2147483648 should be in 0 .. 2196 [FILE nsgrid.c, LINE 218]
What is wrong with GROMACS? How can I fix it?
The .mdp file used to generate .tpr is:
title = Minimization
cpp = /usr/bin/cpp ; Preprocessor
define = -DPOSRE ; tell grompp to include posre.itp
using position restraints
include = -I /local directory
integrator = steep
emtol = 1.0
emstep = 0.01 ; initial step-size [nm]
nsteps = 5000
nstenergy = 100
nstxtcout = 100
xtc_grps = Protein OCT SOL
energygrps = Protein OCT SOL
nstlist = 10
ns_type = grid
rlist = 1.0
coulombtype = cut-off
rcoulomb = 1.4
vdwtype = cut-off
rvdw = 1.3
constraints = none
pbc = xyz
;freeze protein
freezegrps = Protein K+ KS
freezedim = Y Y Y Y Y N Y Y N
energygrp_excl = Protein Protein SOL SOL
Thank you!
Binbin
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