[gmx-users] A question about DNA and normal mode analysis in gromacs
Kristina Nicole Woods
kwoods at stanford.edu
Tue Mar 8 21:51:39 CET 2005
I am interested in doing a normal mode analysis of a fragment of DNA in
gromacs to explore some of the lower frequency modes that could be
compared with the experimental far-infrared spectrum of DNA.
I have absolutely no experience in setting such a system up...and I was
wondering if there has been a tutorial (kind of like the one available in
the documentation section of the gromacs webpage) at some time or another
in the past that goes through all of the steps of setting up a normal
mode analysis using gromacs (not necessarily using DNA)?
More information about the gromacs.org_gmx-users