[gmx-users] Unknown argument: spc216.gro Fatal error: Program genbox halted

David spoel at xray.bmc.uu.se
Wed Mar 23 20:00:51 CET 2005


On Wed, 2005-03-23 at 19:59 +0200, Vlad Scepanovsky wrote:
> > >
> > >                                             
> > Hello Florian
> >I did as you adviced but a new problem occured. 
> >Counting my steps:
> >a). pdb2gmx -f cm5.pdb -o cm5.gro -p cm5.top -i posre.itp -ignh
> >b). editconf -bt octahedron -f cm5.gro -o cm5.gro -c -d 1.0
> >c). genbox -cp cm5.gro -cs spc216.gro -o cm5_b4ion.gro -p topol.top
> >After the last point I received a message:
> >"Unknown argument: spc216.gro
> >Fatal error: Program genbox halted"  
> >But spc216.gro is at it's place in Gromacs 
check GMXLIB variable

> >Would you be so glad to give me advice?
> 
>                                            Senserely yours 
>                                                 Vladimir Schepanovsky.
>  
> 
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,          75124 Uppsala, Sweden
phone:  46 18 471 4205          fax: 46 18 511 755
spoel at xray.bmc.uu.se    spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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