[gmx-users] Nucleotide version of United Residue Potential

[David]

On Mon, 2005-03-28 at 23:30 +0900, HYUN-CHUL KIM wrote:
> Hi, all
> Is there a nucleotide version of United Residue Potential?
>  
> I want to simulate a large DNA so that I need to assign a nucleotide
> as a point just like a United Residue Potential of protein.
> If this is not possible in Gromacs, any other packages can do this?
>  
You'll have to define your own force field. Chapter 5 of the manual.

> Sincerely,
>  
> Hyun-Chul Kim
>  
> Biomatics Lab. 
> Department of Biosystems
> Korea Advanced Institute of Science and Technology
> Yusung-Gu, Taejon 305-333
> Republic of Korea
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,          75124 Uppsala, Sweden
phone:  46 18 471 4205          fax: 46 18 511 755
spoel at xray.bmc.uu.se    spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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