[gmx-users] screen Coulomb interactions.

Anton Feenstra feenstra at few.vu.nl
Tue May 10 21:52:31 CEST 2005


xieyh at hkusua.hku.hk wrote:

> Dear all:
> 
> For example, in my system, I have an atom A with charge 1.0e, and another atom B
> with charge -0.5e. Normally, if A & B are within the cutoff distance, a
> non-bonded electrostatic interactions will be calculated.
> 
> For some special reason, can I exclude such Coulomb interactions (let it be
> zero)? If yes, how?

Between only A and B, no. Between A and any other (charged) atom, yes, 
but only by simply assigning charge zero to A. If A and B are within the 
same molecule, you can exclude *all* interactions by adding an 
appropriate exclusion in your topology file.


-- 
Groetjes,

Anton

* NOTE: New Phone & Fax numbers (below) *

  _____________ _______________________________________________________
|             |                                                       |
|  _   _  ___,| K. Anton Feenstra                                     |
| / \ / \'| | | Dept. of Pharmacochem. - Vrije Universiteit Amsterdam |
|(   |   )| | | De Boelelaan 1083 - 1081 HV Amsterdam - Netherlands   |
| \_/ \_/ | | | Tel: +31 20 59 87608 - Fax: +31 20 59 87610           |
|             | Feenstra at few.vu.nl - www.few.vu.nl/~feenstra/         |
|             | "If You See Me Getting High, Knock Me Down" (RHCP)    |
|_____________|_______________________________________________________|





More information about the gromacs.org_gmx-users mailing list