[gmx-users] (no subject)

Anton Feenstra feenstra at few.vu.nl
Tue May 10 22:24:13 CEST 2005


sridhar at cdfd.org.in wrote:

> Dear GMXUSERS,
> 
> g_rms has the option for generation of rmsd matrix file. Can anybody
> kindly explain over what atoms the rmsds in this matrix are calculated 
> ? Also is there any way to generate rmsd matrix with rmsds calculated for 
> selected index groups ? 

g_rms will ask you which groups you want to use for fitting and rmsd 
calculation.

-- 
Groetjes,

Anton

* NOTE: New Phone & Fax numbers (below) *

  _____________ _______________________________________________________
|             |                                                       |
|  _   _  ___,| K. Anton Feenstra                                     |
| / \ / \'| | | Dept. of Pharmacochem. - Vrije Universiteit Amsterdam |
|(   |   )| | | De Boelelaan 1083 - 1081 HV Amsterdam - Netherlands   |
| \_/ \_/ | | | Tel: +31 20 59 87608 - Fax: +31 20 59 87610           |
|             | Feenstra at few.vu.nl - www.few.vu.nl/~feenstra/         |
|             | "If You See Me Getting High, Knock Me Down" (RHCP)    |
|_____________|_______________________________________________________|





More information about the gromacs.org_gmx-users mailing list