[gmx-users] a flat plane boundary condition

[Beckett W Sterner]

Hi,
  I'm interested in doing a simple simulation of how a protein folds as it
slowly emerges from a pore through a cell membrane.  I unfortunately do
not have a crystal structure for the pore, and would like to keep
computational costs to a minimum, so I'm interested in running an MD
simulation on the protein where one end is fixed to a flat plane with a 2d
periodic boundary condition.  Is there a way to implement this in GROMACS,
perhaps using a force field?

Thanks,
Beckett