[gmx-users] learning Gromacs

[Иванов Миша]

Dear Abdullah Nasr,

I am also a newcomer in Gromacs. I performed the following tutorials and they greatly helped me in my work:
1)
http://www.gromacs.org/documentation/reference_3.1/online/getting_started.html
2)
http://md.chem.rug.nl/education.html
3)
http://www2.umdnj.edu/~kerrigje/pdf_files/trp_drug_tutor.pdf

I also advise you to read several articles with MD performed in Gromacs. It'll help you to set the different parametres in mdp files.

However, if you are from Illinois, may be it's better to use NAMD?

Sincerely yours,
Misha Ivanov
-----Original Message-----
From: Abdullah Nasr <nasrabd at iit.edu>
To: gmx-users at gromacs.org
Date: Fri, 18 Nov 2005 17:44:37 -0600
Subject: [gmx-users] learning Gromacs

> 
> Hello
> I'm doing my PhD in Illinois Institute of Technology in 
> Crystallization and my professor in interested in applying Molecular 
> Dynamics in this field. 
> 
> Could anyone please tell me where to start learning Gromacs. I've been 
> reading the manual for about one month and I did some of the tutorials 
> but I still don't feel I can run a simulation. Is there any other 
> source to learn how to run Gromacs simulation?
> 
> Thank you in advance
> Abdullah Nasr
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