[gmx-users] mean square fluctuation amplitude

[David van der Spoel]

Prasad Gajula wrote:
> Dear Gromacs Users,
> 
> I need to calculate  "mean square fluctuation amplitude" ( <delta ß>² ) of
> an atom from the MD trajectory.
> Can any of  you give me some suggestions how can i calculate it.
g_rmsf
> 
> looking forward for some suggestions.
> Thanks and regards
> Gajula
> 
> 
> 
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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