[gmx-users] box size problem

[leafyoung81-group at yahoo.com]

--- Rahul Karyappa <r.karyappa at ncl.res.in> wrote:
> 
> Dear all,
>      I want to generate a box of size 18 x 18 x 18
> (nm x nm x nm) which consists of a polymer chain
> surrounded by water molecules. So first by using
> editconf command I created the box with the above
> specified size. But when I gave command genbox to
> add the water molecules, my PC got hanged. Is there
> any limit for box size specification?
sorry that I cannot reproduce this with a box size
25x25x25. my genbox version is VERSION
3.3_beta_20050202. Where does genbox stop? 
>    I am using Fedora Core 3.0 on HP machine. Before
> this I have ran lots of simulations with the box
> size around 5 x 5 x 5 (nm x nm x nm) and it ran
> fine.
> What may be the problem? Looking forward to your
> kind reply.
> Rahul Karyappa
> NCL, Pune
> 
>
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