[gmx-users] gromacs3.3 problem after installation

[Wang Zhun]

Hi,
I've installed version 3.3 but failed to get it work.
Eg: pdb2gmx is in my path but cannot be found, and  segmentation fault 
will occur if it's carried out.
I don't know what's the problem.


[wzh at hewei wzh]$ pdb2gmx -h
tmpstrtrp[i]tmpstrtrp[i]tmpstrtra and K. 
Nemototmpstrtrtmpstrtrtmpstrtrtmpstrtrtmpstrtrtmpstrtrtmpstrtrtmpstrtrp[i]tmpstrtrp[i]t 
of range 
(135930989)------------------------------------------------------------
No filetype (null)
d argument rint help info for option (null)Segmentation fault
[wzh at hewei wzh]$ whereis pdb2gmx
pdb2gmx:
[wzh at hewei wzh]$ ls /usr/local/gromacs/bin/pdb2gmx
/usr/local/gromacs/bin/pdb2gmx*
[wzh at hewei wzh]$ echo $PATH
/usr/local/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games:/usr/X11R6/bin:/usr/games:/usr/X11R6/bin:/usr/games:/usr/X11R6/bin:/usr/games:.:/usr/X11R6/bin:/usr/games:/usr/local/gromacs/bin:/home/wzh/biolinux/autodock/bin:/home/wzh/bin
[wzh at hewei wzh]$  /usr/local/gromacs/bin/pdb2gmx
tmpstrtrp[i]tmpstrtrp[i]tmpstrtra and K. 
Nemototmpstrtrtmpstrtrtmpstrtrtmpstrtrtmpstrtrtmpstrtrtmpstrtrtmpstrtrp[i]tmpstrtrp[i]t 
of range 
(135930989)------------------------------------------------------------
No filetype (null)
d argument rint help info for option (null)Segmentation fault