[gmx-users] SS from xpm file
David van der Spoel
spoel at xray.bmc.uu.se
Mon Oct 24 17:17:08 CEST 2005
On Mon, 2005-10-24 at 17:01 +0200, Nguyen Hoang Phuong wrote:
> Dear All,
> after performing do_dssp, I got the file like ss.xpm which looks like
> each line contains the information about secondary structures of one
> residue. I would like to compute the percentages of the structures S, T
> etc. for each residue. To this end I have to count how many letters S, T
> of each line. Do you know how to performing this counting?
> Many thanks in advance,
look in the xvg file that is produced as well.
> gmx-users mailing list
> gmx-users at gromacs.org
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
spoel at xray.bmc.uu.se spoel at gromacs.org http://xray.bmc.uu.se/~spoel
More information about the gromacs.org_gmx-users