[gmx-users] How PRODRG generate coordinates??

[Rahul Karyappa]

Dear all,

   I am converting .pdb file to .gro and .top from PRODRG
server website. After converting it I found that the coordinates of the
atoms are different . Can anybody tell me how it changes the
coordinates? What is the method? I need to find it out because PRODRG
does not support NA+ atoms and I want to generate coordinates according
to PRODRG method. Please help me out.

Thanking you in advance.


Rahul Karyappa

NCL, India




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