September 2005 Archives by thread

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Starting: Thu Sep 1 00:35:12 CEST 2005
Ending: Fri Sep 30 23:44:48 CEST 2005
Messages: 491

• [gmx-users] Bob Arenburg/Austin/IBM is out of the office.   Bob Arenburg
• [gmx-users] Steepest Descent   Bob Johnson
  • [gmx-users] Steepest Descent   David van der Spoel
• [gmx-users] Background run   Jeffrey Chua
  • [gmx-users] Background run   leafyoung81-group at yahoo.com
  • [gmx-users] Background run   David van der Spoel
  • [gmx-users] Background run   Milan Melichercik
• [gmx-users] Re: Background run   Pim Schravendijk
• [gmx-users] Segmentation Fault, unless using bond constraints   Joanne Hanna
• [gmx-users] A SGI Altix 3700 system with 512 Itanium 2 processors and 1Terabyte of memory   Naser, Md Abu
  • [gmx-users] A SGI Altix 3700 system with 512 Itanium 2 processors and 1Terabyte of memory   Mark Abraham
    • [gmx-users] A SGI Altix 3700 system with 512 Itanium 2 processors and 1Terabyte of memory   Erik Lindahl
• [gmx-users] adding potassium   Magnus Andersson
• [gmx-users] The RMSD problem   Qing Zhu
• [gmx-users] charmm compatibility   Matt Ziegler
  • [gmx-users] charmm compatibility   Marcela P. Aliste
• [gmx-users] HELP install on AlphaTrue64   Luciano Costa
  • [gmx-users] HELP install on AlphaTrue64   Mark Abraham
• [gmx-users] Simulation crashing   Farid Sa'adedin
  • [gmx-users] Simulation crashing   David van der Spoel
    • [gmx-users] Simulation crashing   fsaadedi at staffmail.ed.ac.uk
      • [gmx-users] Simulation crashing   fsaadedi at staffmail.ed.ac.uk
      • [gmx-users] Unknown arguement -e   fsaadedi at staffmail.ed.ac.uk
      • [gmx-users] Simulation crashing   David van der Spoel
• [gmx-users] Gromacs-3.3: release candidate 1 available!   Erik Lindahl
• [gmx-users] pull DNA   qwp
  • [gmx-users] pull DNA   Maik Goette
• [gmx-users] Questions in using non-equilibrium dynamics   qwp
• [gmx-users] problem with mdrun   poor nima
• [gmx-users] Questions in using non-equilibrium dynamics   David van der Spoel
• [gmx-users] Questions in using non-equilibrium dynamics   qwp
• [gmx-users] A SGI Altix 3700 system with 512 Itanium 2 processorsand 1Terabyte of memory   Naser, Md Abu
• [gmx-users] Brown paper bag release (3.3-rc1 updated)   Erik Lindahl
• [gmx-users] equilibriation questions   Ramachandra Rao Gullapalli
  • [gmx-users] equilibriation questions   Erik Lindahl
• [gmx-users] (no subject)   Naser, Md Abu
• [gmx-users] Help with combining to .gro files into one simulation   Chris Gaughan
  • [gmx-users] Help with combining to .gro files into one simulation   David
    • [gmx-users] Help with combining to .gro files into one simulation   Chris Gaughan
      • [gmx-users] Help with combining to .gro files into one simulation   Tsjerk Wassenaar
      • [gmx-users] Help with combining to .gro files into one simulation   Mark Abraham
• [gmx-users] how to run NVT MD???   Rahul Karyappa
  • [gmx-users] how to run NVT MD???   David
• [gmx-users] How PRODRG generate coordinates??   Rahul Karyappa
  • [gmx-users] How PRODRG generate coordinates??   Daan van Aalten
• [gmx-users] chargegroups????????   Rahul Karyappa
  • [gmx-users] chargegroups????????   David
    • [gmx-users] chargegroups????????   Rahul Karyappa
• [gmx-users] partial charges   Joanne Hanna
  • [gmx-users] partial charges   David van der Spoel
• [gmx-users] problem with Na+ ions....   Rahul Karyappa
  • [gmx-users] problem with Na+ ions....   David van der Spoel
    • [gmx-users] problem with Na+ ions....   Rahul Karyappa
    • [gmx-users] Where to add Na+ ions data   Rahul Karyappa
      • [gmx-users] Where to add Na+ ions data   Tsjerk Wassenaar
• [gmx-users] install   Joanne Hanna
  • [gmx-users] install   David
• [gmx-users] Zn-NE2 bond restraint   Wei Fu
  • [gmx-users] Zn-NE2 bond restraint   David
• [gmx-users] Chage modifications with pdb2gmx   Krzeminski
  • [gmx-users] Chage modifications with pdb2gmx   David van der Spoel
    • [gmx-users] Chage modifications with pdb2gmx   Krzeminski
• [gmx-users] Segmentation fault   Naser, Md Abu
  • [gmx-users] Segmentation fault   David van der Spoel
• [gmx-users] dummies   Maik Goette
  • [gmx-users] dummies   Omololu Akin-Ojo
    • [gmx-users] dummies   Maik Goette
• [gmx-users] Segmentation fault   Naser, Md Abu
• [gmx-users] pull DNA   qwp
• [gmx-users] errors while running pdb2gmx   Rahul Karyappa
  • [gmx-users] errors while running pdb2gmx   Sanjay Nilapwar
• [gmx-users] genbox -shell   Wang Zhun
• [gmx-users] which force field to select!   Prettina Anto_Louis
  • [gmx-users] which force field to select!   Itamar Kass
• [gmx-users] Re: Zn-NE2 bond restraint   Wei Fu
• [gmx-users] Fatal error:box vectors shorter than cut-off length   Wang Zhun
• [gmx-users] query on using g_bundle   Dilraj Lama
  • [gmx-users] query on using g_bundle   Dilraj Lama
• [gmx-users] Fatal error:box vectors shorter than cut-off length   Dallas B. Warren
• [gmx-users] how to set parameter to ionize protein   chiloo Laohpongspaisan
  • [gmx-users] how to set parameter to ionize protein   Louic Vermeer
• [gmx-users] crystal water   Joanne Hanna
  • [gmx-users] crystal water   Maik Goette
    • [gmx-users] PME in CVS   Andrey V. Golovin
      • [gmx-users] PME in CVS   Erik Lindahl
      • [gmx-users] PME in CVS   Andrey V. Golovin
      • [gmx-users] PME in CVS   Erik Lindahl
      • [gmx-users] PME in CVS   Andrey V. Golovin
      • [gmx-users] PME in CVS   Andrey V. Golovin
      • [gmx-users] 3-3_rc1   Ken Rotondi
      • [gmx-users] 3-3_rc1   Ken Rotondi
• [gmx-users] Engergy minimization   Naser, Md Abu
  • [gmx-users] Engergy minimization   Erik Lindahl
• [gmx-users] Parallel running problem   Alan Dodd
  • [gmx-users] Parallel running problem   Heikki Käsnänen
    • [gmx-users] Strange results   Jordi Camps
      • [gmx-users] Strange results   David
      • [gmx-users] Strange results   Jordi Camps
      • [gmx-users] Strange results   David
      • [gmx-users] Strange results   Jordi Camps
      • [gmx-users] Strange results   David van der Spoel
  • [gmx-users] Parallel running problem   David van der Spoel
    • [gmx-users] Parallel running problem   Alan Dodd
      • [gmx-users] Parallel running problem   Peter C. Lai
      • [gmx-users] Parallel running problem   Alan Dodd
      • [gmx-users] Parallel running problem   Erik Lindahl
      • [gmx-users] Parallel running problem   Danny K
• [gmx-users] separating bilayer leaflets - POPC vs. DMPC and DPPC   Louic Vermeer
  • [gmx-users] separating bilayer leaflets - POPC vs. DMPC and DPPC   Andrey V. Golovin
    • [gmx-users] separating bilayer leaflets - POPC vs. DMPC and DPPC   Louic Vermeer
      • [gmx-users] separating bilayer leaflets - POPC vs. DMPC and DPPC   David L. Bostick
      • [gmx-users] separating bilayer leaflets - POPC vs. DMPC and DPPC   Eric Jakobsson
      • [gmx-users] separating bilayer leaflets - POPC vs. DMPC and DPPC   David
      • [gmx-users] separating bilayer leaflets - POPC vs. DMPC and DPPC   Eric Jakobsson
      • [gmx-users] separating bilayer leaflets - POPC vs. DMPC and DPPC   David
      • [gmx-users] separating bilayer leaflets - POPC vs. DMPC and DPPC   Eric Jakobsson
      • [gmx-users] separating bilayer leaflets - POPC vs. DMPC and DPPC   David
    • [gmx-users] separating bilayer leaflets - POPC vs. DMPC and DPPC   Louic Vermeer
      • [gmx-users] separating bilayer leaflets - POPC vs. DMPC and DPPC   Andrey V. Golovin
      • [gmx-users] rdf doesn't tend to unity   Ester Chiessi
      • [gmx-users] rdf doesn't tend to unity   David
      • [gmx-users] rdf doesn't tend to unity   Ester Chiessi
      • [gmx-users] rdf doesn't tend to unity   David
      • [gmx-users] rdf doesn't tend to unity   Ester Chiessi
      • [gmx-users] rdf doesn't tend to unity   Andre Farias de Moura
      • [gmx-users] rdf doesn't tend to unity   Ester Chiessi
      • [gmx-users] rdf doesn't tend to unity   David
      • [gmx-users] rdf doesn't tend to unity   Ester Chiessi
• [gmx-users] terminal residues come off and fragment   Chris Gaughan
  • [gmx-users] terminal residues come off and fragment   David van der Spoel
    • [gmx-users] terminal residues come off and fragment   Chris Gaughan
• [gmx-users] Help and thanks   Tanping Li
  • [gmx-users] How to get the periodic image of some wateres   Tanping Li
    • [gmx-users] How to get the coordinate of periodic image   Tanping Li
      • [gmx-users] How to get the coordinate of periodic image   David
      • [gmx-users] How to get the coordinate of periodic image   Louic Vermeer
      • [gmx-users] How to get the coordinate of periodic image   Tanping Li
• [gmx-users] Announcing the release of VigyaanCD v1.0   Pratul K. Agarwal
  • [gmx-users] Announcing the release of VigyaanCD v1.0   Erik Lindahl
• [gmx-users] Where to add hydrogens!   Prettina Anto_Louis
  • [gmx-users] Where to add hydrogens!   David van der Spoel
• [gmx-users] gromos96 file format   Mark Abraham
• [gmx-users] gromos96 file format   Dallas B. Warren
  • [gmx-users] gromos96 file format   Mark Abraham
• [gmx-users] SHAKE and pbc=full   leafyoung81-group at yahoo.com
  • [gmx-users] SHAKE and pbc=full   David van der Spoel
• [gmx-users] RE: Segmentation fault (PSE)   Graham Smith
• [gmx-users] RE: Segmentation fault (PSE)   Naser, Md Abu
• [gmx-users] MDRUN errors   Rahul Karyappa
  • [gmx-users] MDRUN errors   leafyoung81-group at yahoo.com
    • [gmx-users] MDRUN errors   Rahul Karyappa
      • [gmx-users] MDRUN errors   leafyoung81-group at yahoo.com
• [gmx-users] RE: gmx-users Digest, Vol 17, Issue 22   Graham Smith
• [gmx-users] SHAKE and pbc=full   leafyoung81-group at yahoo.com
  • [gmx-users] SHAKE and pbc=full   David van der Spoel
    • [gmx-users] SHAKE and pbc=full   leafyoung81-group at yahoo.com
      • [gmx-users] SHAKE and pbc=full   David van der Spoel
      • [gmx-users] SHAKE and pbc=full   leafyoung81-group at yahoo.com
      • [gmx-users] SHAKE and pbc=full   David van der Spoel
      • [gmx-users] SHAKE and pbc=full   leafyoung81-group at yahoo.com
      • [gmx-users] SHAKE and pbc=full   David van der Spoel
• [gmx-users] Re : Gromacs-3.3: release candidate 1 available!   Michel Cuendet
  • [gmx-users] Re : Gromacs-3.3: release candidate 1 available!   Erik Lindahl
• [gmx-users] dihedral angle by DIALS   Linda
• [gmx-users] about protonation state   Cesar Lopez
• [gmx-users] about residues protonation   Cesar Lopez
• [gmx-users] 3-3_rc1   mprabha at fiu.edu
• [gmx-users] LJ Switch function in the CVS VERSION 3.3_beta_20050202   Xuhui Huang
  • [gmx-users] LJ Switch function in the CVS VERSION 3.3_beta_20050202   David
    • [gmx-users] LJ Switch function in the CVS VERSION 3.3_beta_20050202   Erik Lindahl
• [gmx-users] Trajectory Analysis!   chiloo Laohpongspaisan
  • [gmx-users] Trajectory Analysis!   leafyoung81-group at yahoo.com
    • [gmx-users] Trajectory Analysis!   chiloo Laohpongspaisan
      • [gmx-users] Trajectory Analysis!   leafyoung81-group at yahoo.com
• [gmx-users] Using OPLSAA   Ramesh Sistla
• [gmx-users] Opening gromacs trajectory in Insight   tuhin at iitk.ac.in
  • [gmx-users] Opening gromacs trajectory in Insight   Mark Abraham
• [gmx-users] LJ Switch function in the CVS VERSION3.3_beta_20050202   Mu Yuguang (Dr)
  • [gmx-users] LJ Switch function in the CVS VERSION3.3_beta_20050202   David van der Spoel
• [gmx-users] system is bigger but box remains   taveechai taveecharoenkool
• [gmx-users] system is bigger but box remains   taveechai taveecharoenkool
• [gmx-users] system is bigger but box remains   taveechai taveecharoenkool
  • [gmx-users] system is bigger but box remains   Tsjerk Wassenaar
  • [gmx-users] system is bigger but box remains   Alan Dodd
• [gmx-users] problem in viewing trajectory for the whole system   Rahul Karyappa
  • [gmx-users] problem in viewing trajectory for the whole system   Itamar Kass
• [gmx-users] Re: gmx-users Digest, Vol 17, Issue 30   taveechai taveecharoenkool
• [gmx-users] Re: gmx-users Digest, Vol 17, Issue 30   taveechai taveecharoenkool
• [gmx-users] Parameters for organic molecules   naga raju
  • [gmx-users] Parameters for organic molecules   Daan van Aalten
• [gmx-users] loiuc vermeer-seperating bilayers.   Ramachandra Rao Gullapalli
  • [gmx-users] loiuc vermeer-seperating bilayers.   Erik Lindahl
  • [gmx-users] loiuc vermeer-seperating bilayers.   Eric Jakobsson
• [gmx-users] equilibration time and NVT run   ARGYRIOS KARATRANTOS
• [gmx-users] separating bilayer leaflets - POPC vs. DMPC and DPPC   Ramachandra Rao Gullapalli
  • [gmx-users] separating bilayer leaflets - POPC vs. DMPC and DPPC   David L. Bostick
• [gmx-users] Octahderal box   Joanne Hanna
  • [gmx-users] error mesage in log file   Alberto Malvezzi
  • [gmx-users] Octahderal box   David
• [gmx-users] Can I put multiple simulations at a time?????????   Rahul Karyappa
  • [gmx-users] Can I put multiple simulations at a time?????????   David
  • [gmx-users] Can I put multiple simulations at a time?????????   Itamar Kass
• [gmx-users] Octahderal box   Joanne Hanna
  • [gmx-users] Octahderal box   David
• [gmx-users] Octahderal box   Joanne Hanna
  • [gmx-users] Octahderal box   David
• [gmx-users] orientation of helical peptide   Dilraj Lama
  • [gmx-users] orientation of helical peptide   Louic Vermeer
    • [gmx-users] orientation of helical peptide   Eric Jakobsson
• [gmx-users] Octahderal box   Joanne Hanna
  • [gmx-users] Octahderal box   David
• [gmx-users] Octahderal box   Joanne Hanna
• [gmx-users] PME and coulomb energy calculation   Lei Zhou
• [gmx-users] [Fwd: questions about PME and Coulomb energy]   David
• [gmx-users] Re: orientation of helical peptide (Dilraj Lama)   Santi Esteban Martin
  • [gmx-users] Re: orientation of helical peptide (Dilraj Lama)   Guillem Portella
• [gmx-users] system is exploding   taveechai taveecharoenkool
  • [gmx-users] system is exploding   Itamar Kass
• [gmx-users] constraints and pbc=full   Malin Bergenstrahle
  • [gmx-users] constraints and pbc=full   Yang Ye
• [gmx-users] gromacs-3.3, release candidate 2   Erik Lindahl
• [gmx-users] Rerun   Eva Priego
  • [gmx-users] Rerun   David
• [gmx-users] system is exploding   taveechai taveecharoenkool
• [gmx-users] Re: gmx-users Digest, Vol 17, Issue 39   Malin Bergenstrahle
  • [gmx-users] Re: gmx-users Digest, Vol 17, Issue 39   David
  • [gmx-users] Re: gmx-users Digest, Vol 17, Issue 39   Yang Ye
• [gmx-users] lipid bilayer equilibriation questions   Rama Gullapalli
• [gmx-users] Slow opterons : low Mega Flops   Gia Maisuradze
  • [gmx-users] Slow opterons : low Mega Flops   Erik Lindahl
    • [gmx-users] Slow opterons : low Mega Flops   Gia Maisuradze
      • [gmx-users] Slow opterons : low Mega Flops   David van der Spoel
  • [gmx-users] random protein breaking   Gia Maisuradze
    • [gmx-users] random protein breaking   David van der Spoel
      • [gmx-users] Protein blowing apart   Gia Maisuradze
      • [gmx-users] Protein blowing apart   David
      • [gmx-users] Protein blowing apart   Gia Maisuradze
      • [gmx-users] Protein blowing apart   David
      • [gmx-users] MD run with position restraints   Gia Maisuradze
      • [gmx-users] MD run with position restraints   leafyoung81-group at yahoo.com
      • [gmx-users] MD run with position restraints   Gia Maisuradze
      • [gmx-users] MD run with position restraints   David
      • [gmx-users] MD run with position restraints   Gia Maisuradze
      • [gmx-users] Conversion codes   gia at chem.unr.edu
      • [gmx-users] Conversion codes   Nguyen Hoang Phuong
      • [gmx-users] Conversion codes   Erik Lindahl
      • [gmx-users] Conversion codes   Gia Maisuradze
• [gmx-users] User Defined Potentials   hassanal at purdue.edu
  • [gmx-users] User Defined Potentials   David van der Spoel
    • [gmx-users] User Defined Potentials   Berk Hess
• [gmx-users] parallel runs problem   Isaiah Arkin
• [gmx-users] how to measure end-to-end distance of the chain????????   Rahul Karyappa
  • [gmx-users] how to measure end-to-end distance of the chain????????   David van der Spoel
  • [gmx-users] how to measure end-to-end distance of the chain????????   diego vallejo
• [gmx-users] How to add specific no. of water molecules????????   Rahul Karyappa
  • [gmx-users] How to add specific no. of water molecules????????   David van der Spoel
• [gmx-users] [Fwd: a question]   David van der Spoel
• [gmx-users] Engergy minimization   Naser, Md Abu
  • [gmx-users] Engergy minimization   David
• [gmx-users] pbc=full   ARGYRIOS KARATRANTOS
  • [gmx-users] pbc=full   David
• [gmx-users] gromacs-3.3 and User defined Potentials   hassanal at purdue.edu
  • [gmx-users] gromacs-3.3 and User defined Potentials   Berk Hess
    • [gmx-users] gromacs-3.3 and User defined Potentials   hassanal at purdue.edu
      • [gmx-users] gromacs-3.3 and User defined Potentials   Berk Hess
• [gmx-users] macromolecule in solution   ARGYRIOS KARATRANTOS
  • [gmx-users] macromolecule in solution   David
• [gmx-users] [Fwd: two questions about Gromacs!]   David
  • [gmx-users] [Fwd: two questions about Gromacs!]   Yang Ye
• [gmx-users] question about g_nmeig again   Joohyun Kim
  • [gmx-users] question about g_nmeig again   David
  • [gmx-users] question about g_nmeig again   Erik Lindahl
• [gmx-users] bilayer area questions   Rama Gullapalli
• [gmx-users] bilayer area questions   Dallas B. Warren
  • [gmx-users] bilayer area questions WITH DATA   Rama Gullapalli
    • [gmx-users] bilayer area questions WITH DATA   David
      • [gmx-users] bilayer area questions WITH DATA   Rama Gullapalli
      • [gmx-users] bilayer area questions WITH DATA   David
      • [gmx-users] bilayer area questions WITH DATA   Rama Gullapalli
      • [gmx-users] bilayer area questions WITH DATA   David
• [gmx-users] g_mindist command doubt???????   Rahul Karyappa
  • [gmx-users] g_mindist command doubt???????   Tsjerk Wassenaar
    • [gmx-users] g_mindist command doubt???????   Tsjerk Wassenaar
      • [gmx-users] procedure to measure end-to-end distance of a chain???????   Rahul Karyappa
  • [gmx-users] g_mindist command doubt???????   leafyoung81-group at yahoo.com
• [gmx-users] gen_seed for velocities   YOLANDA SMALL
  • [gmx-users] gen_seed for velocities   David
    • [gmx-users] g_hbond -noda   Ester Chiessi
• [gmx-users] tilt angle protein-membrane   spitaleri.andrea at hsr.it
  • [gmx-users] tilt angle protein-membrane   David
• [gmx-users] calculate protein-membrane angle   andrea spitaleri
• [gmx-users] Fe_S clusters   nk yx
  • [gmx-users] Fe_S clusters   David
• [gmx-users] Some xmgrace version for fedora..   Absalom Zamorano
• [gmx-users] Pi-Cation   hassanal at purdue.edu
  • [gmx-users] Pi-Cation   David
• [gmx-users] questions about pmetest.c   Lei Zhou
  • [gmx-users] questions about pmetest.c   David
• [gmx-users] bilayer area questions WITH DATA   Dallas B. Warren
  • [gmx-users] Bilayer area questions again!   Rama Gullapalli
• [gmx-users] viscosity   leona taba
• [gmx-users] execution error   Jair
• [gmx-users] Bilayer area questions again!   Dallas B. Warren
• [gmx-users] execution error   Dallas B. Warren
  • [gmx-users] Bilayer area questions again!   Rama Gullapalli
• [gmx-users] box type in gro file   Mu Yuguang (Dr)
  • [gmx-users] box type in gro file   Mark Abraham
• [gmx-users] doubt in grompp.mdp(output control options)   Rahul Karyappa
  • [gmx-users] doubt in grompp.mdp(output control options)   leafyoung81-group at yahoo.com
    • [gmx-users] doubt in grompp.mdp(output control options)   Rama Gullapalli
• [gmx-users] periodic condition for a hexagonal prism   Mu Yuguang (Dr)
  • [gmx-users] periodic condition for a hexagonal prism   Tsjerk Wassenaar
• [gmx-users] viscosity   leona taba
• [gmx-users] pmetest.c fixed?   Lei Zhou
  • [gmx-users] pmetest.c fixed?   Mark Abraham
• [gmx-users] About DPPC and DPPS bilayer   Viswanadham Sridhara
  • [gmx-users] About DPPC and DPPS bilayer   Rama Gullapalli
• [gmx-users] frequency of modes by principal components analysis   xzp02 at mails.tsinghua.edu.cn
• [gmx-users] procedure to measure end-to-end distance of a protein   Rahul Karyappa
• [gmx-users] getting structure file from a trajectory (at a particular timestep)   Rahul Karyappa
  • [gmx-users] getting structure file from a trajectory (at a particular timestep)   leafyoung81-group at yahoo.com
  • [gmx-users] getting structure file from a trajectory (at a particular timestep)   Mark Abraham
• [gmx-users] pme & charged system   Kay Gottschalk
  • [gmx-users] pme & charged system   Erik Lindahl
    • [gmx-users] pme & charged system   Berk Hess
• [gmx-users] some questions about computation power of A64   Milan Melichercik
• [gmx-users] lipid bilayer equilibriation data   Rama Gullapalli
• [gmx-users] (no subject)   Naser, Md Abu
  • [gmx-users] (no subject)   David
• [gmx-users] (no subject)   Naser, Md Abu
  • [gmx-users] (no subject)   David
    • [gmx-users] 1-4 interaction lager than .....   Naser, Md Abu
• [gmx-users] (no subject)   Eva Priego
  • [gmx-users] (no subject)   David
  • [gmx-users] (no subject)   Eva Priego
    • [gmx-users] (no subject)   Alan Dodd
    • [gmx-users] (no subject)   Yang Ye
• [gmx-users] Atom typing question   Joanne Hanna
  • [gmx-users] Atom typing question   David
• [gmx-users] How to use ambconv   Bob Johnson
  • [gmx-users] How to use ambconv   Maik Goette
• [gmx-users] Atom typing question   Joanne Hanna
  • [gmx-users] setting FIXFRC   Samuel Flores
    • [gmx-users] setting FIXFRC   David van der Spoel
• [gmx-users] Fatal Error: topology.top not found   Atre Amol Dilip
  • [gmx-users] Fatal Error: topology.top not found   David van der Spoel
• [gmx-users] help   protim chakraborti
• [gmx-users] please tell procedure to measure end-to-end distance of a protein   Rahul Karyappa
• [gmx-users] Dipole correction in PME   Janne Hirvi
  • [gmx-users] Dipole correction in PME   David van der Spoel
• [gmx-users] RNA   vincenzo venditti
  • [gmx-users] RNA   Yang Ye
  • [gmx-users] RNA   Maik Goette
    • [gmx-users] RNA   vincenzo venditti
      • [gmx-users] RNA   Alan Dodd
      • [gmx-users] RNA   Maik Goette
• [gmx-users] free energy of binding   Tao Li
• [gmx-users] compute phi psi as histogram distributions   Dongsheng Zhang
  • [gmx-users] compute phi psi as histogram distributions   David van der Spoel
• [gmx-users] start gromacs membrane more protein simulation   Antonio Sergio Kimus Braz
  • [gmx-users] start gromacs membrane more protein simulation   Andrey V. Golovin
• [gmx-users] About EWD3DC   Janne Hirvi
  • [gmx-users] About EWD3DC   David L. Bostick
• [gmx-users] About EWD3DC in Gromacs 3.3 Beta (9.9.2005)   Janne Hirvi
  • [gmx-users] About EWD3DC in Gromacs 3.3 Beta (9.9.2005)   David L. Bostick
• [gmx-users] Flying icecube   Janne Hirvi
• [gmx-users] Warning errors   Hector Mtz-Seara
  • [gmx-users] Warning errors   Tsjerk Wassenaar
  • [gmx-users] Warning errors   Alberto Malvezzi
• [gmx-users] snapshots of the trajectory   Rahul Karyappa
  • [gmx-users] snapshots of the trajectory   David van der Spoel
• [gmx-users] Fatal Error   Rohini Qamra
• [gmx-users] potential model use   Sriprajak Krongsuk
• [gmx-users] RE: free energy of binding   Graham Smith
• [gmx-users] NOT in make_ndx   Sampo Karkola
  • [gmx-users] NOT in make_ndx   David van der Spoel
  • [gmx-users] NOT in make_ndx   Anton Feenstra
• [gmx-users] genion on a dual machine   vechism at netscape.net
  • [gmx-users] genion on a dual machine   David
• [gmx-users] Gromacs for hydrocarbon rings   Victor Manuel Rosas-Garcia
• [gmx-users] empty .edr files   Rama Gullapalli
  • [gmx-users] empty .edr files   leafyoung81-group at yahoo.com
  • [gmx-users] Re: empty .edr files   MGiò
• [gmx-users] about FENE potential   aa qq
• [gmx-users] about FENE potential   aa qq
• [gmx-users] about FENE potential   aa qq
• [gmx-users] about Gay-Berne potential   aa qq
  • [gmx-users] about Gay-Berne potential   Nguyen Hoang Phuong
• [gmx-users] FATAL ERROR   Amol D. Atre
  • [gmx-users] FATAL ERROR   Marvin Seibert
  • [gmx-users] FATAL ERROR   Rahul Karyappa
• [gmx-users] Help with minim.mdp   Fernando Mattio
  • [gmx-users] Re: Help with minim.mdp   MGiò
• [gmx-users] [quick question on workshop and membrane]   spitaleri.andrea at hsr.it
  • [gmx-users] [quick question on workshop and membrane]   Louic Vermeer
• [gmx-users] quick question on workshop and membrane   andrea spitaleri
• [gmx-users] Checked the .pdb file   Amol D. Atre
• [gmx-users] Checked the .pdb file   Amol D. Atre
• [gmx-users] x2top strange behaviour   Steven Kirk
  • [gmx-users] x2top strange behaviour   David van der Spoel
• [gmx-users] graphite   Grazia Daminelli
• [gmx-users] Versions 3.3 beta?   Ken Rotondi
  • [gmx-users] Versions 3.3 beta?   David
• [gmx-users] problem with g_hbond from 3.3RC2?   Moore, Jonathan (J)
  • [gmx-users] problem with g_hbond from 3.3RC2?   Erik Lindahl
  • [gmx-users] problem with g_hbond from 3.3RC2?   David
    • [gmx-users] problem with g_hbond from 3.3RC2?   David
      • [gmx-users] cooling schedule   Samuel Flores
      • [gmx-users] cooling schedule   David
      • [gmx-users] cooling schedule   Samuel Flores
• [gmx-users] about FENE potential   aa qq
  • [gmx-users] about FENE potential   leafyoung81-group at yahoo.com
• [gmx-users] Help required   Amol D. Atre
• [gmx-users] peptide out of water box after em   Chris Gaughan
• [gmx-users] peptide out of water box after em   Dallas B. Warren
• [gmx-users] Re: empty .edr files   Dallas B. Warren
  • [gmx-users] Re: empty .edr files   MGiò
• [gmx-users] Please help me   Amol D. Atre
• [gmx-users] peptide disappeared   Wang Zhun
• [gmx-users] Ca++ parametrization   eladp at hplus.tau.ac.il
• [gmx-users] Fatal Error: UNK   Amol D. Atre
  • [gmx-users] Fatal Error: UNK   MGiò
• [gmx-users] Re: gmx-users Digest, Vol 17, Issue 63   Jozef Hritz
• [gmx-users] second line in rtp   Jozef Hritz
• [gmx-users] crystal ligand-protein complex   Alberto Malvezzi
  • [gmx-users] crystal ligand-protein complex   Tsjerk Wassenaar
• [gmx-users] umbrella pull code   Christian Schauz
• [gmx-users] Fatal Error: UNK   Dallas B. Warren
• [gmx-users] Distorted bonds   Chris Gaughan
• [gmx-users] sorry... installation problem   Jeroen Mesters
  • [gmx-users] sorry... installation problem   leafyoung81-group at yahoo.com
    • [gmx-users] sorry... installation problem   Alan Dodd
• [gmx-users] Analysis - 1 ns simulation - output files that already exist   Fernando Mattio
  • [gmx-users] Analysis - 1 ns simulation - output files that already exist   Tsjerk Wassenaar
• [gmx-users] Long range forces, periodic boundaries and aggregation   Steven Kirk
  • [gmx-users] Long range forces, periodic boundaries and aggregation   Alan Dodd
  • [gmx-users] Long range forces, periodic boundaries and aggregation   Mark Abraham
• [gmx-users] Surface tension help!   Hector Mtz-Seara
• [gmx-users] Force field database   Amol D. Atre
  • [gmx-users] Force field database   Mark Abraham
• [gmx-users] ffgmx_lipids and OWT4   andrea spitaleri
• [gmx-users] NVT.mdp equilibration problem   fsaadedi at staffmail.ed.ac.uk
  • [gmx-users] NVT.mdp equilibration problem   Anton Feenstra
    • [gmx-users] NVT.mdp equilibration problem   fsaadedi at staffmail.ed.ac.uk
• [gmx-users] run pdb2gmx   Weidong Xin
  • [gmx-users] run pdb2gmx   Fernando Mattio
  • [gmx-users] run pdb2gmx   MGiò
• [gmx-users] pdb2gmx --- fatal error- .gro file not created   Fernando Mattio
  • [gmx-users] pdb2gmx --- fatal error- .gro file not created   MGiò
    • [gmx-users] pdb2gmx --- fatal error- .gro file not created   Alan Dodd
      • [gmx-users] pdb2gmx --- fatal error- .gro file not created   Fernando Mattio
• [gmx-users] about temperature   aa qq
  • [gmx-users] about temperature   Anton Feenstra
• [gmx-users] NVT ensemble   fsaadedi at staffmail.ed.ac.uk
  • [gmx-users] NVT ensemble   Itamar Kass
    • [gmx-users] NVT ensemble   Sukit Leekumjorn
      • [gmx-users] NVT ensemble   leafyoung81-group at yahoo.com
      • [gmx-users] g_traj   Sukit Leekumjorn
      • [gmx-users] g_traj   Berk Hess
• [gmx-users] User defined potential functions.   Omololu Akin-Ojo
  • [gmx-users] User defined potential functions.   Anton Feenstra
    • [gmx-users] User defined potential functions.   Omololu Akin-Ojo
• [gmx-users] Modify Bilayer   Hector Mtz-Seara
• [gmx-users] Empty plot with g_density   Janne Hirvi
• [gmx-users] expected it to be for 1 nodes   Jeroen Mesters
  • AW: [gmx-users] expected it to be for 1 nodes   Jens Krüger
  • [gmx-users] expected it to be for 1 nodes   Omololu Akin-Ojo
  • [gmx-users] mpich/share/machines file for dual processor machine   Jeroen Mesters
    • [gmx-users] mpich/share/machines file for dual processor machine   David
      • [gmx-users] mpich/share/machines file for dual processor machine   Jeroen Mesters
      • [gmx-users] mpich/share/machines file for dual processor machine   Omololu Akin-Ojo
      • [gmx-users] mpich/share/machines file for dual processor machine   David
    • [gmx-users] mpich/share/machines file for dual processor machine   MGiò
    • [gmx-users] mpich/share/machines file for dual processor machine   Peter C. Lai
• [gmx-users] g_hbond errors   YOLANDA SMALL
• [gmx-users] methyl proper dihedral multiplicity in gmx2   Mateusz Nowak
• [gmx-users] Inter helical distance   Dilraj Lama
  • [gmx-users] Inter helical distance   David
• [gmx-users] ldd output   Jeroen Mesters
  • [gmx-users] ldd output   David
    • [gmx-users] ldd output   Jeroen Mesters
      • [gmx-users] ldd output   David
• [gmx-users] Variable (sinusoidal) acceleration for acc_grp   Jon
  • [gmx-users] Variable (sinusoidal) acceleration for acc_grp   David
• [gmx-users] Atom N21 not found   Ken Rotondi
• [gmx-users] RPMDRUN compilation   gloria fuentes
• [gmx-users] g_wham problem   arnab mukherjee
  • [gmx-users] g_wham problem   Guillem Portella
• [gmx-users] Variable (sinusoidal) acceleration for acc_grp   Jon
• Fwd: [gmx-users] Atom N21 not found   Ken Rotondi
  • [gmx-users] The energy conservation of NVE system in Gromos96   Tanping Li

Last message date: Fri Sep 30 23:44:48 CEST 2005
Archived on: Thu Nov 14 12:02:13 CET 2013

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