[gmx-users] orientation of helical peptide

[Dilraj Lama]

hello gmx-users,
                I have two helical peptide of 16 residues each.I want to orient these peptides
parallel to each other in one case and perpendicular to one another in another.How
can I do this using Gromacs?

Please suggest.

Thank you.
-- 
Dilraj Lama,
PhD Student,
c/o Dr. R. Sankararamakrishnan,
Bioinformatics and Biomolecular Simulation Lab,
Dept. of BSBE,IIT-Kanpur,
UP-208016:India
email:dennis at iitk.ac.in;dilraj2002 at yahoo.com
mob:09415473973