[gmx-users] tilt angle protein-membrane
spoel at xray.bmc.uu.se
Wed Sep 14 16:35:23 CEST 2005
On Wed, 2005-09-14 at 16:16 +0200, spitaleri.andrea at hsr.it wrote:
> Hi all,
> I am new in this mailing list and I have a quick question:
> given a protein and a membrane, I followed one of the howto around the
> web for setting up the system using vmd.
> I don't know if it is a gromacs issue, but I am interested to measure
> the angle between the protein-axis and the membrane surface.
> Is there any tool for doing that? Then, how can I monitor the angle
> variation versus time using gromacs? Or do I need to make a my own
> script for that?
check g_bundle or g_helix
> Thanks in advance
> Andrea Spitaleri
> Dulbecco Telethon Institute
> c/o DIBIT Scientific Institute
> Biomolecular NMR, 1B4
> Via Olgettina 58
> 20132 Milano (Italy)
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David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
spoel at xray.bmc.uu.se spoel at gromacs.org http://xray.bmc.uu.se/~spoel
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