[gmx-users] (no subject)

[Eva Priego]

Dear users,

I have concatenated two trajectory files from a crashed md and I would like to
convert it to a .pdb file. When I use the trjconv command I get this error:



trjconv_d -f hlab.trr -o hlabmd.pdb

Will write pdb: Protein data bank file

Fatal error: File topol.tpr not found



As I have rerun the md I have two .tpr files, the initial one before the crash
and the one  I have created with tpbconv to continue the md.

Which one do I have to put in trjconv?. I am using gromacs 3.2.1



Thanks in advance



Eva
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Dr. Eva Maria Priego

Department of Biochemistry. University of Cambridge

80 Tennis Court Road. Cambridge CB2 1GA. U.K.

e-mail:evamaria at cryst.bioc.cam.ac.uk