[gmx-users] ldd output

David spoel at xray.bmc.uu.se
Thu Sep 29 19:10:42 CEST 2005


On Thu, 2005-09-29 at 19:07 +0200, Jeroen Mesters wrote:
> Dear David,
> 
> and here is my ldd output
> 
> /home/mesters> ldd `which mdrun_mpi`
>         linux-gate.so.1 =>  (0xffffe000)
>         libnsl.so.1 => /lib/libnsl.so.1 (0x4002f000)
>         libsrfftw_mpi.so.2 => /usr/lib/libsrfftw_mpi.so.2 (0x40045000)
>         libsfftw_mpi.so.2 => /usr/lib/libsfftw_mpi.so.2 (0x40048000)
>         libsrfftw.so.2 => /usr/lib/libsrfftw.so.2 (0x400a2000)
>         libsfftw.so.2 => /usr/lib/libsfftw.so.2 (0x400cb000)
>         libm.so.6 => /lib/tls/libm.so.6 (0x400fa000)
>         libc.so.6 => /lib/tls/libc.so.6 (0x4011e000)
>         /lib/ld-linux.so.2 => /lib/ld-linux.so.2 (0x40000000)
> 
> I think it was compiled with mpi, would not you agree?
yes.

but with LAM, now check that you have run lamboot and that you use the
correct mpirun (not one from MPICH)

> 
> Cheers, Jeroen.
> 
-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,          75124 Uppsala, Sweden
phone:  46 18 471 4205          fax: 46 18 511 755
spoel at xray.bmc.uu.se    spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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