[gmx-users] N-terminus type PRO-NH

[Mark Abraham]

Nguyen Hoang Phuong wrote:
> Dear All,
> 
> I would like to have the N-terminus type
> 
> PRO-NH
> 
> for my molecule. I saw this option is available in the ffG43a1-n.tdb file
> but pdb2gmx does not provide this option (only NH3+,NH2, or None are
> available). Does anyone know how to get this N-terminus type?

Is pdb2gmx recognising the N-terminal residue as PRO?

Mark