[gmx-users] Membrane error

[Sukit Leekumjorn]

I had a similar problem before.  Check and see if "cpp" is in 
/usr/bin/cpp path.  Sometime it is in /lib/cpp depending on your 
operating system.  You can check the location of cpp by typing "which 
cpp" on the command line.

Hope this help, Sukit

Kushal Seth wrote:
>
>
>     HI all !
>     I am gettting this error  while doing my simulation... for the
>     bilayers
>
>
>
>     Back Off! I just backed up emout-nowater.mdp to
>     ./#emout-nowater.mdp.1#
>     checking input for internal consistency...
>     ...ling /usr/bin/cpp
>     : No such file or directory
>     cpp exit code: 32512
>     -I/usr/local/gromacs/share/gromacs/top  mytop-nowater1.top >
>     gromppdriwHo'
>     ' command is defined in the .mdp file
>     processing topology...
>     processing coordinates...
>     -------------------------------------------------------
>     Program grompp, VERSION 3.3
>     Source code file: grompp.c, line: 427
>
>     Fatal error:
>     number of coordinates in coordinate file
>     (binaryCR-Ochol-box-largeZ.pdb, 10280)
>                 does not match topology (mytop-nowater1.top, 0)
>
>     I would appreciate if anyone can help me out with this.
>     Thanks
>     Kris
>
>
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>
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