[gmx-users] Membrane error

[Kushal Seth]

Dear All!
Thanks for your replies.My CPP path seems to be ok as far as the location is
concerened and I continue to get the same error messsages.
Is there any other reason for that ( my top files also seem to be wroking
for other simulations )
Need help ASAP.
Thanks again to you all.
Kris



On 4/4/06, Sukit Leekumjorn <leekumjo at vt.edu> wrote:
>
> I had a similar problem before.  Check and see if "cpp" is in
> /usr/bin/cpp path.  Sometime it is in /lib/cpp depending on your
> operating system.  You can check the location of cpp by typing "which
> cpp" on the command line.
>
> Hope this help, Sukit
>
> Kushal Seth wrote:
> >
> >
> >     HI all !
> >     I am gettting this error  while doing my simulation... for the
> >     bilayers
> >
> >
> >
> >     Back Off! I just backed up emout-nowater.mdp to
> >     ./#emout-nowater.mdp.1#
> >     checking input for internal consistency...
> >     ...ling /usr/bin/cpp
> >     : No such file or directory
> >     cpp exit code: 32512
> >     -I/usr/local/gromacs/share/gromacs/top  mytop-nowater1.top >
> >     gromppdriwHo'
> >     ' command is defined in the .mdp file
> >     processing topology...
> >     processing coordinates...
> >     -------------------------------------------------------
> >     Program grompp, VERSION 3.3
> >     Source code file: grompp.c, line: 427
> >
> >     Fatal error:
> >     number of coordinates in coordinate file
> >     (binaryCR-Ochol-box-largeZ.pdb, 10280)
> >                 does not match topology (mytop-nowater1.top, 0)
> >
> >     I would appreciate if anyone can help me out with this.
> >     Thanks
> >     Kris
> >
> >
> > ------------------------------------------------------------------------
> >
> > _______________________________________________
> > gmx-users mailing list    gmx-users at gromacs.org
> > http://www.gromacs.org/mailman/listinfo/gmx-users
> > Please don't post (un)subscribe requests to the list. Use the
> > www interface or send it to gmx-users-request at gromacs.org.
> > Can't post? Read http://www.gromacs.org/mailing_lists/users.php
>
> _______________________________________________
> gmx-users mailing list    gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20060405/e9c5be52/attachment.html>