[gmx-users] gromacs3.3.1 compilation error in SGI

Erik Lindahl lindahl at sbc.su.se
Fri Apr 7 11:37:21 CEST 2006


Hi,

It says in the error message - here's the full path:

gromacs-3.3.1/src/mdlib/gmx_fft_fftw3.c.

Cheers,

Erik


On Apr 7, 2006, at 11:15 AM, raja wrote:

> Dear Mr. Erick and Mr. spoel,
>       Sorry , I am not a programmer, so please let me know which file
>       under the folder "src" I have to incorporate
> this change you are suggested.
>
> With thanks !
> B.Nataraj
> On Fri, 07 Apr 2006 10:47:43 +0200, "David van der Spoel"
> <spoel at xray.bmc.uu.se> said:
>> Erik Lindahl wrote:
>>> Hi Raja,
>>>
>>> Try changing the "void" on line 150 to "char". gcc doesn't complain
>>> about this casting even with full warnings, so we missed one  
>>> instance.
>>>
>> Maybe you'd rather need
>>
>> pc = (void *)(pc + 8)
>>
>> or even better
>>
>> pc = &(pc[8])
>>
>>> Erik
>>>
>>>
>>> On Apr 7, 2006, at 10:36 AM, raja wrote:
>>>
>>>> Dear all,
>>>> I just tried to install groamcs3.3.1, with a hope to overcome the
>>>> earlier bug I posted for 3.3 version
>>>> (http://www.gromacs.org/pipermail/gmx-users/2006-April/ 
>>>> 020850.html) .But
>>>> an other error occured in groamcs3.3.1 in SGI compilation..
>>>> Error
>>>> ################################################################### 
>>>> ########
>>>>
>>>>  -I../../src  -I../../include
>>>>  -DGMXLIBDIR=\"/usr/local/gromacs/share/top\" -I/usr/local/include
>>>>  -r12000 -mips4 -O3 -OPT:IEEE_arithmetic=3 -OPT:rsqrt=ON
>>>>  -SWP:loop_overhead -INLINE:=ON -LNO:opt=1 -LNO:ou_further=3
>>>>  -OPT:Olimit=0:roundoff=3:alias=typed -woff 1174 - 
>>>> D__INLINE_INTRINSICS
>>>>  -c -o qm_gaussian.lo qm_gaussian.c
>>>>  cc -DHAVE_CONFIG_H -I. -I. -I../../src -I../../include
>>>>  -DGMXLIBDIR=\"/usr/local/gromacs/share/top\" -I/usr/local/include
>>>>  -r12000 -mips4 -O3 -OPT:IEEE_arithmetic=3 -OPT:rsqrt=ON
>>>>  -SWP:loop_overhead -INLINE:=ON -LNO:opt=1 -LNO:ou_further=3
>>>>  -OPT:Olimit=0:roundoff=3:alias=typed -woff 1174 - 
>>>> D__INLINE_INTRINSICS
>>>>  -c qm_gaussian.c -Wp,-MDupdate,.deps/qm_gaussian.TPlo -o  
>>>> qm_gaussian.o
>>>>         source='gmx_fft_fftw3.c' object='gmx_fft_fftw3.lo'  
>>>> libtool=yes \
>>>>         DEPDIR=.deps depmode=sgi /bin/sh ../../config/depcomp \
>>>>         /bin/sh ../../libtool --tag=CC --mode=compile cc - 
>>>> DHAVE_CONFIG_H
>>>>          -I. -I. -I../../src  -I../../include
>>>>         -DGMXLIBDIR=\"/usr/local/gromacs/share/top\"
>>>>         -I/usr/local/include   -r12000 -mips4 -O3 - 
>>>> OPT:IEEE_arithmetic=3
>>>>         -OPT:rsqrt=ON -SWP:loop_overhead -INLINE:=ON -LNO:opt=1
>>>>         -LNO:ou_further=3 -OPT:Olimit=0:roundoff=3:alias=typed - 
>>>> woff
>>>>         1174 -D__INLINE_INTRINSICS -c -o gmx_fft_fftw3.lo
>>>>         gmx_fft_fftw3.c
>>>>  cc -DHAVE_CONFIG_H -I. -I. -I../../src -I../../include
>>>>  -DGMXLIBDIR=\"/usr/local/gromacs/share/top\" -I/usr/local/include
>>>>  -r12000 -mips4 -O3 -OPT:IEEE_arithmetic=3 -OPT:rsqrt=ON
>>>>  -SWP:loop_overhead -INLINE:=ON -LNO:opt=1 -LNO:ou_further=3
>>>>  -OPT:Olimit=0:roundoff=3:alias=typed -woff 1174 - 
>>>> D__INLINE_INTRINSICS
>>>>  -c gmx_fft_fftw3.c -Wp,-MDupdate,.deps/gmx_fft_fftw3.TPlo -o
>>>>  gmx_fft_fftw3.o
>>>> cc-3316 cc: ERROR File = gmx_fft_fftw3.c, Line = 186
>>>>   The expression must be a pointer to a complete object type.
>>>>
>>>>       pc += 8;
>>>>       ^
>>>>
>>>> cc-3316 cc: ERROR File = gmx_fft_fftw3.c, Line = 190
>>>>   The expression must be a pointer to a complete object type.
>>>>
>>>>       pc += 8;
>>>>       ^
>>>>
>>>> 2 errors detected in the compilation of "gmx_fft_fftw3.c".
>>>> *** Error code 1 (bu21)
>>>> *** Error code 1 (bu21)
>>>> *** Error code 1 (bu21)
>>>> *** Error code 1 (bu21)
>>>> ################################################################### 
>>>> ##########
>>>>
>>>>
>>>> I am desparate to compile in SGI , Please help me.
>>>>
>>>> With thanks !
>>>> B.Nataraj
>>>> --  raja
>>>>   raja_28 at fastmail.us
>>>>
>>>> --http://www.fastmail.fm - Access all of your messages and folders
>>>>                           wherever you are
>>>>
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>>>
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>>
>>
>> -- 
>> David.
>> _____________________________________________________________________ 
>> ___
>> David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
>> Dept. of Cell and Molecular Biology, Uppsala University.
>> Husargatan 3, Box 596,          75124 Uppsala, Sweden
>> phone:  46 18 471 4205          fax: 46 18 511 755
>> spoel at xray.bmc.uu.se    spoel at gromacs.org   http://folding.bmc.uu.se
>> +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ 
>> +++++
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> -- 
>   raja
>   raja_28 at fastmail.us
>
> -- 
> http://www.fastmail.fm - Access your email from home and the web
>
> _______________________________________________
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