[gmx-users] gromacs3.3.1 compilation error in SGI
raja
raja_28 at fastmail.us
Fri Apr 7 12:43:16 CEST 2006
Dear Mr.Lindhal and Mr.Goel,
Based on your previous mail , I did these modification in
gmx_fft_fftw3.c
######################################################################
int
gmx_fft_init_1d_real(gmx_fft_t * pfft,
int nx)
{
gmx_fft_t fft;
real *p1,*p2,*up1,*up2;
char pc;
pc = &(pc[8]);
int i,j,k;
if(pfft==NULL)
{
########################################################################
But I got these errors...
############################### ERROR ##################################
cc -DHAVE_CONFIG_H -I. -I. -I../../src -I../../include
-DGMXLIBDIR=\"/usr/local
/gromacs/share/top\" -I/usr/local/include -r12000 -mips4 -O3
-OPT:IEEE_arithmeti
c=3 -OPT:rsqrt=ON -SWP:loop_overhead -INLINE:=ON -LNO:opt=1
-LNO:ou_further=3 -O
PT:Olimit=0:roundoff=3:alias=typed -woff 1174 -D__INLINE_INTRINSICS -c
gmx_fft_f
ftw3.c -Wp,-MDupdate,.deps/gmx_fft_fftw3.TPlo -o gmx_fft_fftw3.o
cc-1138 cc: ERROR File = gmx_fft_fftw3.c, Line = 151
Expression must have pointer-to-object type.
pc = &(pc[8]);
^
cc-1551 cc: WARNING File = gmx_fft_fftw3.c, Line = 151
The variable "pc" is used before its value is set.
pc = &(pc[8]);
^
cc-1241 cc: ERROR File = gmx_fft_fftw3.c, Line = 152
A declaration cannot appear after an executable statement in a block.
int i,j,k;
^
cc-1515 cc: ERROR File = gmx_fft_fftw3.c, Line = 186
A value of type "void *" cannot be assigned to an entity of type
"char".
pc = (void *)p1;
^
cc-1515 cc: ERROR File = gmx_fft_fftw3.c, Line = 190
A value of type "void *" cannot be assigned to an entity of type
"char".
pc = (void *)p2;
^
4 errors detected in the compilation of "gmx_fft_fftw3.c".
*** Error code 1 (bu21)
*** Error code 1 (bu21)
*** Error code 1 (bu21)
*** Error code 1 (bu21)
#################################################################################
Did I do any thing wrong in modification ?
Thanks !
B.Nataraj
On Fri, 7 Apr 2006 11:37:21 +0200, "Erik Lindahl" <lindahl at sbc.su.se>
said:
> Hi,
>
> It says in the error message - here's the full path:
>
> gromacs-3.3.1/src/mdlib/gmx_fft_fftw3.c.
>
> Cheers,
>
> Erik
>
>
> On Apr 7, 2006, at 11:15 AM, raja wrote:
>
> > Dear Mr. Erick and Mr. spoel,
> > Sorry , I am not a programmer, so please let me know which file
> > under the folder "src" I have to incorporate
> > this change you are suggested.
> >
> > With thanks !
> > B.Nataraj
> > On Fri, 07 Apr 2006 10:47:43 +0200, "David van der Spoel"
> > <spoel at xray.bmc.uu.se> said:
> >> Erik Lindahl wrote:
> >>> Hi Raja,
> >>>
> >>> Try changing the "void" on line 150 to "char". gcc doesn't complain
> >>> about this casting even with full warnings, so we missed one
> >>> instance.
> >>>
> >> Maybe you'd rather need
> >>
> >> pc = (void *)(pc + 8)
> >>
> >> or even better
> >>
> >> pc = &(pc[8])
> >>
> >>> Erik
> >>>
> >>>
> >>> On Apr 7, 2006, at 10:36 AM, raja wrote:
> >>>
> >>>> Dear all,
> >>>> I just tried to install groamcs3.3.1, with a hope to overcome the
> >>>> earlier bug I posted for 3.3 version
> >>>> (http://www.gromacs.org/pipermail/gmx-users/2006-April/
> >>>> 020850.html) .But
> >>>> an other error occured in groamcs3.3.1 in SGI compilation..
> >>>> Error
> >>>> ###################################################################
> >>>> ########
> >>>>
> >>>> -I../../src -I../../include
> >>>> -DGMXLIBDIR=\"/usr/local/gromacs/share/top\" -I/usr/local/include
> >>>> -r12000 -mips4 -O3 -OPT:IEEE_arithmetic=3 -OPT:rsqrt=ON
> >>>> -SWP:loop_overhead -INLINE:=ON -LNO:opt=1 -LNO:ou_further=3
> >>>> -OPT:Olimit=0:roundoff=3:alias=typed -woff 1174 -
> >>>> D__INLINE_INTRINSICS
> >>>> -c -o qm_gaussian.lo qm_gaussian.c
> >>>> cc -DHAVE_CONFIG_H -I. -I. -I../../src -I../../include
> >>>> -DGMXLIBDIR=\"/usr/local/gromacs/share/top\" -I/usr/local/include
> >>>> -r12000 -mips4 -O3 -OPT:IEEE_arithmetic=3 -OPT:rsqrt=ON
> >>>> -SWP:loop_overhead -INLINE:=ON -LNO:opt=1 -LNO:ou_further=3
> >>>> -OPT:Olimit=0:roundoff=3:alias=typed -woff 1174 -
> >>>> D__INLINE_INTRINSICS
> >>>> -c qm_gaussian.c -Wp,-MDupdate,.deps/qm_gaussian.TPlo -o
> >>>> qm_gaussian.o
> >>>> source='gmx_fft_fftw3.c' object='gmx_fft_fftw3.lo'
> >>>> libtool=yes \
> >>>> DEPDIR=.deps depmode=sgi /bin/sh ../../config/depcomp \
> >>>> /bin/sh ../../libtool --tag=CC --mode=compile cc -
> >>>> DHAVE_CONFIG_H
> >>>> -I. -I. -I../../src -I../../include
> >>>> -DGMXLIBDIR=\"/usr/local/gromacs/share/top\"
> >>>> -I/usr/local/include -r12000 -mips4 -O3 -
> >>>> OPT:IEEE_arithmetic=3
> >>>> -OPT:rsqrt=ON -SWP:loop_overhead -INLINE:=ON -LNO:opt=1
> >>>> -LNO:ou_further=3 -OPT:Olimit=0:roundoff=3:alias=typed -
> >>>> woff
> >>>> 1174 -D__INLINE_INTRINSICS -c -o gmx_fft_fftw3.lo
> >>>> gmx_fft_fftw3.c
> >>>> cc -DHAVE_CONFIG_H -I. -I. -I../../src -I../../include
> >>>> -DGMXLIBDIR=\"/usr/local/gromacs/share/top\" -I/usr/local/include
> >>>> -r12000 -mips4 -O3 -OPT:IEEE_arithmetic=3 -OPT:rsqrt=ON
> >>>> -SWP:loop_overhead -INLINE:=ON -LNO:opt=1 -LNO:ou_further=3
> >>>> -OPT:Olimit=0:roundoff=3:alias=typed -woff 1174 -
> >>>> D__INLINE_INTRINSICS
> >>>> -c gmx_fft_fftw3.c -Wp,-MDupdate,.deps/gmx_fft_fftw3.TPlo -o
> >>>> gmx_fft_fftw3.o
> >>>> cc-3316 cc: ERROR File = gmx_fft_fftw3.c, Line = 186
> >>>> The expression must be a pointer to a complete object type.
> >>>>
> >>>> pc += 8;
> >>>> ^
> >>>>
> >>>> cc-3316 cc: ERROR File = gmx_fft_fftw3.c, Line = 190
> >>>> The expression must be a pointer to a complete object type.
> >>>>
> >>>> pc += 8;
> >>>> ^
> >>>>
> >>>> 2 errors detected in the compilation of "gmx_fft_fftw3.c".
> >>>> *** Error code 1 (bu21)
> >>>> *** Error code 1 (bu21)
> >>>> *** Error code 1 (bu21)
> >>>> *** Error code 1 (bu21)
> >>>> ###################################################################
> >>>> ##########
> >>>>
> >>>>
> >>>> I am desparate to compile in SGI , Please help me.
> >>>>
> >>>> With thanks !
> >>>> B.Nataraj
> >>>> -- raja
> >>>> raja_28 at fastmail.us
> >>>>
> >>>> --http://www.fastmail.fm - Access all of your messages and folders
> >>>> wherever you are
> >>>>
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> >>
> >>
> >> --
> >> David.
> >> _____________________________________________________________________
> >> ___
> >> David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
> >> Dept. of Cell and Molecular Biology, Uppsala University.
> >> Husargatan 3, Box 596, 75124 Uppsala, Sweden
> >> phone: 46 18 471 4205 fax: 46 18 511 755
> >> spoel at xray.bmc.uu.se spoel at gromacs.org http://folding.bmc.uu.se
> >> +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> >> +++++
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> > --
> > raja
> > raja_28 at fastmail.us
> >
> > --
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--
raja
raja_28 at fastmail.us
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