[gmx-users] GROMACS 3.3.1 installation on SGI (Irix): 2

[David van der Spoel]

Akshay Patny wrote:
> Hi
> Hi ALl
> 
> I read through some of the e-mails of B. Nataraj and Erik Lindahl for
> similar problem on compiling of GROMACS 3.3.1 on SGI IRIX.
> 
> As my error also pointed to a problem in "gmx_fft_fftw3.c", I replaced the
> 'void' with 'char' in the line 150 of the file, as suggested.
> 
> I got the errors exactly the same as B. Nataraj got after doing this
> modification, which is listed at
> http://www.gromacs.org/pipermail/gmx-users/2006-April/020969.html 
> 
> The same error is given below. I could not understand how to fix this error
> and run GROMACS successfully. 
> 
> Dr. Erik Lindahl wrote that: "As far as I can see that file is perfectly
> valid ANSI C - there is no executable statement in the declaration section."
> 
> However, I still do not know how to fix this?
> 

there is a double semicolon on one of the lines before it. please remove 
it and retry.

> Please help.
> 
> Regards
> Akshay
> 
> Error is given below:
> ____________________________________________________________________________
> 
> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1031
>   A declaration cannot appear after an executable statement in a block.
> 
>     static real core_frac=0.5 ;  
>     ^
> 
> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1032
>   A declaration cannot appear after an executable statement in a block.
> 
>     t_pargs pa[] = {
>     ^
> 
> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1073
>   A declaration cannot appear after an executable statement in a block.
> 
>     FILE       *log;
>     ^
> 
> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1074
>   A declaration cannot appear after an executable statement in a block.
> 
>     int        natoms,nlist,naa,idum,nbin; 
>     ^
> 
> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1075
>   A declaration cannot appear after an executable statement in a block.
> 
>     t_atoms    atoms;
>     ^
> 
> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1076
>   A declaration cannot appear after an executable statement in a block.
> 
>     rvec       *x;
>     ^
> 
> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1077
>   A declaration cannot appear after an executable statement in a block.
> 
>     matrix     box;
>     ^
> 
> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1078
>   A declaration cannot appear after an executable statement in a block.
> 
>     char       title[256],grpname[256]; 
>     ^
> 
> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1079
>   A declaration cannot appear after an executable statement in a block.
> 
>     t_dlist    *dlist;
>     ^
> 
> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1080
>   A declaration cannot appear after an executable statement in a block.
> 
>     char       **aa;
>     ^
> 
> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1081
>   A declaration cannot appear after an executable statement in a block.
> 
>     bool       bChi,bCorr,bSSHisto;
>     ^
> 
> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1082
>   A declaration cannot appear after an executable statement in a block.
> 
>     bool       bDo_rt, bDo_oh, bDo_ot, bDo_jc ; 
>     ^
> 
> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1083
>   A declaration cannot appear after an executable statement in a block.
> 
>     real       dt=0, traj_t_ns;
>     ^
> 
> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1085
>   A declaration cannot appear after an executable statement in a block.
> 
>     atom_id    isize,*index;
>     ^
> 
> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1086
>   A declaration cannot appear after an executable statement in a block.
> 
>     int        ndih,nactdih,nf;
>     ^
> 
> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1087
>   A declaration cannot appear after an executable statement in a block.
> 
>     real       **dih,*trans_frac,*aver_angle,*time;
>     ^
> 
> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1088
>   A declaration cannot appear after an executable statement in a block.
> 
>     int        i,j,**chi_lookup,*xity; 
>     ^
> 
> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1090
>   A declaration cannot appear after an executable statement in a block.
> 
>     t_filenm  fnm[] = {
>     ^
> 
> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1106
>   A declaration cannot appear after an executable statement in a block.
> 
>     int     npargs;
>     ^
> 
> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1107
>   A declaration cannot appear after an executable statement in a block.
> 
>     t_pargs *ppa;
>     ^
> 
> 20 errors detected in the compilation of "gmx_chi.c".
> *** Error code 1 (bu21)
> *** Error code 1 (bu21)
> *** Error code 1
> (bu21)______________________________________________________________________
> ______
> 
> 
> Akshay Patny
> 
> Graduate Research Assistant
> Faser Hall 417, Department of Medicinal Chemistry
> Research Institute of Pharmaceutical Sciences
> University of Mississippi
> University, MS 38677
> E-mail: akshay17 at olemiss.edu
> Tel: 662-915-1286 (office); Web: www.olemiss.edu 
> 
> 
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se
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