[gmx-users] GROMACS 3.3.1 installation on SGI (Irix)

[Erik Lindahl]

Hi,

Change the type of those two variables from "void *" to "char *". We  
modified it in all other places, but missed these two.

Cheers,

Erik

On Apr 17, 2006, at 8:41 PM, Akshay Patny wrote:

> Dear All
>
>
>
> This is Akshay Patny from The University of Mississippi.
>
>
>
> I am trying to install GROMACS 3.3.1 on SGI ORIGIN 350 with 8  
> parallel 700 MHz MIPS R16000 (IP35) processors.
>
>
>
> As I do not have access to root, I am trying to install everything  
> including the FFTW and GROMACS in my home directory which is:
>
>
>
> /mnt1/usr/akshayp/
>
>
>
> I used the following source code from the website
>
> gromacs-3.3.1.tar.gz
>
> 2006-04-06
>
> 1af34a99950813ca7cf893253c447cd1
>
>
>
> I think I already have ANSI C compiler so I installed FFTW 3.1  
> before installing GROMACS as mentioned. I installed FFTW in both  
> single as well as double precision mode as advised and it went  
> through.
>
>
>
> I installed FFTW in /mnt1/usr/akshayp/fftw-3.1.1
>
>
>
> After that, I tried installing the GROMACS as given
>
>
>
> In installed it in /mnt1/usr/akshayp/gromacs-3.3.1 which was the  
> directory created after I untared the source code file.
>
> First step:
>
> ./configure
>
>
>
> The output of this command is given in Output_Gromacs_Configure.txt  
> file.
>
>
>
> Second step:
>
> make >&l og
>
>
>
> The output of this command is given in Output_Gromacs_make_log.txt  
> file.
>
>
>
> Third step:
>
> make install
>
>
>
> The output of this command is given in  
> Output_Gromacs_make_install.txt file.
>
>
>
> The second and third steps gave some errors. The last few lines  
> including error for are as follows:
>
> ______________________________________________________________________ 
> _________
>
>
>
> cc-3316 cc: ERROR File = gmx_fft_fftw3.c, Line = 186
>
> The expression must be a pointer to a complete object type.
>
>
>
>       pc += 8;
>
>       ^
>
>
>
> cc-3316 cc: ERROR File = gmx_fft_fftw3.c, Line = 190
>
>   The expression must be a pointer to a complete object type.
>
>
>
>       pc += 8;
>
>       ^
>
>
>
> 2 errors detected in the compilation of "gmx_fft_fftw3.c".
>
> *** Error code 1 (bu21)
>
> *** Error code 1 (bu21)
>
> *** Error code 1 (bu21)
>
> ______________________________________________________________________ 
> _________
>
>
>
> Can somebody guide me how can I fix this error? Also, please tell  
> me as I have installed GROMACS in a local directory, what else I  
> need to change (such as in the cshrc) and how? A little detailed  
> answer will be of great help, as I am new to the UNIX installation  
> area.
>
>
>
> Please let me know in case you need any additional information from  
> my side.
>
>
>
> Looking forward to hear from you
>
>
>
> Kind Regards
>
> Akshay
>
>
>
> Akshay Patny
>
> Graduate Research Assistant
> Faser Hall 417, Department of Medicinal Chemistry
>
> Research Institute of Pharmaceutical Sciences
> University of Mississippi
> University, MS 38677
> E-mail: akshay17 at olemiss.edu
> Tel: 662-915-1286 (office); Web: www.olemiss.edu
>
>
>
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