[gmx-users] Gromacs-3.3.1 installation

[Erik Lindahl]

Hi,

You should never install software in the same directory as where you  
are building in, in particular when it is configured with GNU tools.

Cheers,

Erik


On Apr 26, 2006, at 9:27 AM, Akshay Patny wrote:

> Hi
>
>
>
> I am trying to install Gromacs-3.3.1 The machine is SGI Altix and  
> the output of the uname –a for machine is:
>
>
>
> Linux redwood 2.6.5-7.244-sn2 #1 SMP Mon Dec 12 18:32:25 UTC 2005  
> ia64 ia64 ia64 GNU/Linux
>
>
>
> I do not have root privileges and I am trying to install it in the  
> local directory I have permissions for which is:
>
>
>
> I unpacked gromacs-3.3.1.tar in the /work1/r0914
>
>
>
> It made a directory /work1/r0914/gromacs-3.3.1/
>
>
>
> I first installed fftw-3.1.1 (both single precision and double  
> precision using) in a separate directory which is:
>
>
>
> ums/ro914/fftw-3.1.1
>
>
>
> Then, I cd to /work1/r0914/gromacs-3.3.1/
>
>
>
> # setenv CPPFLAGS –I/ ums/ro914/fftw-3.1.1/include
>
> # setenv LDFLAGS –L/ ums/ro914/fftw-3.1.1/lib
>
>
>
> # ./configure –prefix=/work1/r0914/gromacs-3.3.1/
>
>
>
> # make
>
>
>
> # make install
>
>
>
> I got the error in the make install which is:
>
> ______________________________________________________________________ 
> ____________________
>
>
>
> /usr/bin/install: `./g_sham.1' and `/work1/r0914/gromacs-3.3.1/man/ 
> man1/g_sham.1' are the same file
>
>  /usr/bin/install -c -m 644 './make_edi.1' '/work1/r0914/ 
> gromacs-3.3.1/man/man1/make_edi.1'
>
> /usr/bin/install: `./make_edi.1' and `/work1/r0914/gromacs-3.3.1/ 
> man/man1/make_edi.1' are the same file
>
> make[3]: *** [install-man1] Error 1
>
> make[3]: Leaving directory `/work1/r0914/gromacs-3.3.1/man/man1'
>
> make[2]: *** [install-am] Error 2
>
> make[2]: Leaving directory `/work1/r0914/gromacs-3.3.1/man/man1'
>
> make[1]: *** [install-recursive] Error 1
>
> make[1]: Leaving directory `/work1/r0914/gromacs-3.3.1/man'
>
> make: *** [install-recursive] Error 1
>
> ______________________________________________________________________ 
> ____________________
>
>
>
> Let me know if you need other details
>
>
>
> Regards
>
> Akshay
>
>
>
> Akshay Patny
>
>
> Graduate Research Assistant
> Faser Hall 417, Department of Medicinal Chemistry
>
> Research Institute of Pharmaceutical Sciences
> University of Mississippi
> University, MS 38677
> E-mail: akshay17 at olemiss.edu
> Tel: 662-915-1286 (office); Web: www.olemiss.edu
>
>
>
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