[gmx-users] do_dssp error

Mark Abraham mark.abraham at anu.edu.au
Thu Apr 27 09:22:45 CEST 2006

> Hi,
>   I have a problem with do_dssp command. When I ran it, I found this fatal
> error “ DSSP executable </usr/local/bin/dssp> does not exist. Then I
> used from setenv DSSP command, but I found this error “setenv is not
> recognized as an internal or external command,..”

You need to have DSSP installed and to know where it is and to set up
whatever environment variables do_dssp requires. If I recall correctly,
setenv only works for tcsh, you appear to be using another shell, probably
bash. Either change shells or find out the correct command to set an
environment variable.


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