[gmx-users] GROMACS on Ubunto

[David van der Spoel]

Itamar Kass wrote:
> And that means? Or better, how do I overcome it?
> 
change your PATH environment variable to have GROMACS first.

> Itamar.
> 
> David van der Spoel wrote:
>> Itamar Kass wrote:
>>> Shalom all,
>>>
>>> I am trying to install GROMACS 3.3.1 on my Ubuntu/dapper machine.  
>>> The installation is OK, and pdb2gmx as well as grompp are OK also. 
>>> Still, when I try to run mdrun I got this error message.
>>>
>>> mknod: `dm': Permission denied
>>> mknod: `dm': Permission denied
>>> mknod: `dm': Permission denied
>>> mknod: `dm': Permission denied
>>> mknod: `dm': Permission denied
>>> mdadm: /dev/md-v not identified in config file.
>>>
>>> Any ideas anyone?
>>>
>>> Best, Itamar.
>>>
>> that's another mdrun program, from the RAID tools.
>>
>>
> 


-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se
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