[gmx-users] GROMACS on Ubunto

[Erik Lindahl]

Hi,

Try using the full path, e.g. /usr/local/bin/mdrun if you installed  
from rpm, or /usr/local/gromacs/bin/mdrun if you compiled from source.

Cheers,

Erik

On Aug 8, 2006, at 11:46 AM, Itamar Kass wrote:

> And that means? Or better, how do I overcome it?
>
> Itamar.
>
> David van der Spoel wrote:
>> Itamar Kass wrote:
>>> Shalom all,
>>>
>>> I am trying to install GROMACS 3.3.1 on my Ubuntu/dapper  
>>> machine.  The installation is OK, and pdb2gmx as well as grompp  
>>> are OK also. Still, when I try to run mdrun I got this error  
>>> message.
>>>
>>> mknod: `dm': Permission denied
>>> mknod: `dm': Permission denied
>>> mknod: `dm': Permission denied
>>> mknod: `dm': Permission denied
>>> mknod: `dm': Permission denied
>>> mdadm: /dev/md-v not identified in config file.
>>>
>>> Any ideas anyone?
>>>
>>> Best, Itamar.
>>>
>> that's another mdrun program, from the RAID tools.
>>
>>
>
> -- 
> ===========================================
> | Itamar Kass
> | The Alexander Silberman
> | Institute of Life Sciences
> | Department of Biological Chemistry
> | The Hebrew University, Givat-Ram
> | Jerusalem, 91904, Israel
> | Tel: +972-(0)2-6585194
> | Fax: +972-(0)2-6584329
> | Email: ikass at cc.huji.ac.il
> | Net: http://membranelab.huji.ac.il/itamar_homepage/ 
> itamar_homepage.html
> ============================================
>
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