[gmx-users] Error in compiling GROMACS3.2.1

raja raja_28 at fastmail.us
Fri Feb 3 09:54:53 CET 2006


Dear GMXIONs,
       There is need for me to install GROMACS3.2.1 for its
       compatiability in conversting RNA pdb file to gmx file 
(pdb2gmx) as per the reference from GROMACS user forum
(http://www.gromacs.org/pipermail/gmx-users/2005-October/017682.html) .
For that purpose I tried to install GROMACS3.2.1 , More I am having
installed programs of fftw3 for both double and single precision and
GROMACS3.3 in my system.(Hereby I explained why I wanted the previous
version to avoid any suggestions from your side to install latest
version)

But the problem is when I try to compile GROMACS3.2.1 by make command ,
I ended up in following error...
###############################################################################################
til.o topdirs.o grompp.o ../mdlib/libmd.la ../gmxlib/libgmx.la 
-L/usr/X11R6/l
 -lsrfftw -lsfftw -lm   -lSM -lICE -lX11  -L/usr/lib -lxml2 -lz -liconv
 -lm
cc -O6 -fomit-frame-pointer -finline-functions -Wall -Wno-unused
-malign-doubl
-funroll-all-loops -I/usr/include/libxml2 -o grompp.exe topio.o
toppush.o topc
.o topshake.o convparm.o tomorse.o sorting.o splitter.o dum_parm.o
readir.o ad
par.o topexcl.o toputil.o topdirs.o grompp.o  -L/usr/local/fftw/lib
../mdlib/.
bs/libmd.a -L/usr/X11R6/lib -L/usr/lib ../gmxlib/.libs/libgmx.a -lsrfftw
-lsff
 -lSM -lICE -lX11 .libs/libimp-cygxml2-2.a -lz .libs/libimp-cygiconv-2.a
/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../../../i686-pc-cygwin/bin/ld:
cannot fi
 -lz
collect2: ld returned 1 exit status
make[3]: *** [grompp.exe] Error 1

##################################################################################################

>From the reference of user forum I also tried the configuration step by
this command
*******************************************************
>./configure --without-motif-includes 
*******************************************************

Again the same problem 

Thanks !
B.Nataraj
-- 
  raja
  raja_28 at fastmail.us

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