[gmx-users] RNA compatiable FF in GROMACS3.3

raja raja_28 at fastmail.us
Fri Feb 3 06:13:48 CET 2006

yea I edited FF.dat as well in separte run I also enabled -ff amber99
flag during pbd2gmx run.  But still I get 
those errors.... If I use any other ff(in build with GROMACS) works
fine. Help me to fix this problem.

Thanks !

On Fri, 03 Feb 2006 15:48:04 +1100, "Mark Abraham"
<Mark.Abraham at anu.edu.au> said:
> raja wrote:
> > Dear Mr.Yang Ye and other GMXIONs,
> > 
> > Thank for your mail...I downloaded AMBER forcefild package from
> > folding at HOME site. I unpacked and put amber99 forcefield files inside
> > the top folder and tried to run it. Once again it showed simillar error
> > in pdb2gmx run. as 
> > Fatel error in .rtp file... What I should do now ?
> > Please let me what are all the recessary prerequiste to use pdb2gmx for
> > a RNA pdb file using AMBER99 force field in
> > GROMACS3.3.
> You need to edit FF.dat to add the new forcefield so the -ff pdb2gmx 
> flag works.
> Mark
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  raja_28 at fastmail.us

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