[gmx-users] Simulating a peptide
hotafin at gmail.com
Wed Feb 15 15:41:22 CET 2006
And the change in it's conformation may be due to interactions with other
parts of the protein...
On 2/15/06, Itamar Kass <ikass at cc.huji.ac.il> wrote:
> Shalom Raja,
> I would have use more residues, as the structure of 10 residues peptide is
> very unstable.
> | Itamar Kass
> | The Alexander Silberman
> | Institute of Life Sciences
> | Department of Biological Chemistry
> | The Hebrew University, Givat-Ram
> | Jerusalem, 91904, Israel
> | Tel: +972-(0)2-6585194
> | Fax: +972-(0)2-6584329
> | Email: ikass at cc.huji.ac.il
> | Net: http://www.ls.huji.ac.il/~membranelab/itamar/itamar_homepage.html
> ----- Original Message -----
> From: "raja" <raja_28 at fastmail.us>
> To: "Discussion list for GROMACS users" <gmx-users at gromacs.org>
> Sent: Wednesday, February 15, 2006 3:00 PM
> Subject: [gmx-users] Simulating a peptide
> > Dear all,
> > I want to simulate a peptide of 10 residues length small part of a
> > protein of my interest), to see its secondary structure variation
> > upon mutation. Is it enough to simulate that 10 residues alone to
> > see the change or is it mandatory to put entire protein and to
> > seek for posible way to constraint other uninterested region.
> > With Thanks !
> > B.Nataraj
> > --
> > raja
> > raja_28 at fastmail.us
> > --
> > http://www.fastmail.fm - A fast, anti-spam email service.
> > _______________________________________________
> > gmx-users mailing list gmx-users at gromacs.org
> > http://www.gromacs.org/mailman/listinfo/gmx-users
> > Please don't post (un)subscribe requests to the list. Use the
> > www interface or send it to gmx-users-request at gromacs.org.
> > Can't post? Read http://www.gromacs.org/mailing_lists/users.php
> gmx-users mailing list gmx-users at gromacs.org
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
-------------- next part --------------
An HTML attachment was scrubbed...
More information about the gromacs.org_gmx-users