[gmx-users] Simulating a peptide

[Tamas Horvath]

And the change in it's conformation may be due to interactions with other
parts of the protein...

On 2/15/06, Itamar Kass <ikass at cc.huji.ac.il> wrote:
>
>
> Shalom Raja,
>
> I would have use more residues, as the structure of 10 residues peptide is
> very unstable.
>
> Itamar.
>
> ===========================================
> | Itamar Kass
> | The Alexander Silberman
> | Institute of Life Sciences
> | Department of Biological Chemistry
> | The Hebrew University, Givat-Ram
> | Jerusalem, 91904, Israel
> | Tel: +972-(0)2-6585194
> | Fax: +972-(0)2-6584329
> | Email: ikass at cc.huji.ac.il
> | Net: http://www.ls.huji.ac.il/~membranelab/itamar/itamar_homepage.html
> ============================================
> ----- Original Message -----
> From: "raja" <raja_28 at fastmail.us>
> To: "Discussion list for GROMACS users" <gmx-users at gromacs.org>
> Sent: Wednesday, February 15, 2006 3:00 PM
> Subject: [gmx-users] Simulating a peptide
>
>
> > Dear all,
> >      I want to simulate a peptide of 10 residues length small part of a
> >      protein of my interest), to see its secondary structure variation
> >      upon mutation. Is it enough to simulate that 10 residues  alone to
> >      see the change or is it mandatory to put entire protein and to
> >      seek for posible way to constraint other uninterested region.
> >
> > With Thanks !
> >
> > B.Nataraj
> >
> > --
> >  raja
> >  raja_28 at fastmail.us
> >
> > --
> > http://www.fastmail.fm - A fast, anti-spam email service.
> >
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